Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02785 ATGGTGCTCACATCGTCTGCGCGCGAGTACTTCAACCGCATCTTGCAGGACATCTCTGGTATGAAGGTTCTCATCCTTGATTCTCAAACGGTAAGTATTGTGAGTGTTGTGTACTCACAGTCAGAACTTCTTCAGAAAGAAGTGTTTTTGGTAGAATTGGTGGATTCAATTTCCAAGTCAAACGAACCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCTACATCAGAGAATATTCAATATATGCGCCGTCAGCTGGCTAGTCCTAGATTTGGAGAGTATCACTTATTTTTCTCCAACATAATGAAGGACCATCATATTCACTTACTTGCTGATTCAGATGAACAAGAAGTCGTCCAGCAAGTTCAGGAGTTCTATGCAGACTTTGTTGCTATTGATCCTTATCATTTCACTTTCCACATGCCTTCAAATTACATTTATATGCTCCCAGCTGTCATAGATCCTTCAGCATTGCAGCGTTTCAGTGACCGGGTTGTGGAAGGTCTGGCTGCTGTTTTTTTGGCATTAAAAAGGAGACCCGTAATTAGATATCAAAGAACATCCGACATTGCAAAAAGAATAGCACAGGAAGCAGCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTCGATTTTAGGCGAATGGAAGTTTCTCCGTTGTTGTTGGTGATTGACAGGAGGGATGACCCTGTAACCCCGTTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAGGATAACAAAGTGGACGTCAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCAGAACAAGATTCCTTTTTCAAAGTCAACATGTATGAGAATTTTGGAGACATTGGTATGAATATTAAGCGACTGGTTGATGAGTTTCAACAAGTGGCGAAGAGCAATCAGAACATCCAAACAGTAGAGGACATGGCCAAATTTGTTGACAACTACCCTGAGTACAGAAAAATGCATGGGAATGTGACAAAACATGTGACATTGGTAACTGAAATGAGCAAGATTGTTGAAGAGCGAAAACTTATGTTAGTTTCACAAACAGAACAGGAGTTAGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTAACAAATCTACTAAATAATGAAAGCATATCAGATTTGGATCGACTACGGTTGGTCATGCTATATGCTTTGCGATATGAGAAGGATAGCCCTGTTCAATTAATGCAGCTTTTCAACAAACTATCTTCCAGATCTGCCAAATACAAACCTGGGCTTGTCCAGTTTCTTTTGAAGCAGGCAGGTGTTGAAAAGAGAACTGCTGATCTTTACGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCACGTGGACTTAAGGGTGTTGAGAATGTTTACACCCAGCATCAGCCACTTCTGTTCCAAATCATGGAAAGCATTGTCAAAGGGCGGTTGAGAGATGTAGACTACCCATTTTTTGGGAATCATTTCCAACAAGGAAGGCCTCAGGACGTAATTATCTTCATTGTTGGTGGGACAACATATGAGGAGTCACGGTCTGTTGCTCTACAAAATGCCAGCAACACAGGGGTTCGGTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTCAGGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTTCTAGCACCTCTGTTGTTTGA 1707 0.4165 MVLTSSAREYFNRILQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSNEPMSHLKAIYFLRPTSENIQYMRRQLASPRFGEYHLFFSNIMKDHHIHLLADSDEQEVVQQVQEFYADFVAIDPYHFTFHMPSNYIYMLPAVIDPSALQRFSDRVVEGLAAVFLALKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDVKSIGKFPKDQEEVVLSSEQDSFFKVNMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNESISDLDRLRLVMLYALRYEKDSPVQLMQLFNKLSSRSAKYKPGLVQFLLKQAGVEKRTADLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLRDVDYPFFGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGVRFILGGSSVLNSKRFFRDLEEAQRVARSSTSVV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02785 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Vifa2g02785 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 4 556 IPR036045 -
Vifa2g02785 568 Gene3D - 152 555 IPR027482 -
Vifa2g02785 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Vifa2g02785 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Vifa2g02785 568 FunFam Vacuolar sorting protein 3 128 - -
Vifa2g02785 568 Gene3D - 353 474 - -
Vifa2g02785 568 Gene3D - 2 128 IPR043154 -
Vifa2g02785 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 14 554 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02785 Vifa-Chr2 772335943 772342230 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02785 K12479 - gmx:100782786 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02785 2 772335943 772342230 Vifa2g02785 2 772335943 772342230 ECH