Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02715 ATGGGTTGTTGTTGTTCAACTTCAACTTCAAAGAAAGTTAATAGGCCAGGTTATGAGGATCCAACCGTTCTTGCTTCTGAGACACCTTTTACAGTGAGTGAAGTAGATGCATTATATGAACTGTATTTGAAGTTAAGCAATTCTATTATTCAAGATGGTCTTATTCACAAGGAAGAATTTCAGCTAGCACTGTTCAGAAATGAAAACAAAAAGAATCTGTTTGCTGACCGGCTTTTTGACTTATTTGATGTAAAGCGCAACGGGGTTATTGAGTTTGATGAATTCGTTAGATCTCTTGGTGTTTTTCACCCAAACGCAGCTTTAGGAGACAAAATTGCATTTGCTTTTAGGCTTTATGATTTGAGACAAACAGGGTACATTGAAAGAGAGGAGTTAAAGGAAATGGTATCGGCACTTTTGCATGAATCGGATCTTTTTCTTTCAGATGAGATGATAGAATCTATTGTGGATAAAACTTTCAAAGATGCTGATACAAAAGACGATGGAAGGATCGATGAAGATGAGTGGAAAGCTTTTGTTTCTCAACATCCTTCTTTGATTAAGAACATGACTCTTCCATATCTAAAGGATATTACATTGACATTTCCTAGTTTTGTTGCAAGAACACAAGTTGAAGACACCGAGGTGTGA 651 0.3641 MGCCCSTSTSKKVNRPGYEDPTVLASETPFTVSEVDALYELYLKLSNSIIQDGLIHKEEFQLALFRNENKKNLFADRLFDLFDVKRNGVIEFDEFVRSLGVFHPNAALGDKIAFAFRLYDLRQTGYIEREELKEMVSALLHESDLFLSDEMIESIVDKTFKDADTKDDGRIDEDEWKAFVSQHPSLIKNMTLPYLKDITLTFPSFVARTQVEDTEV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02715 216 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Vifa2g02715 216 PANTHER CALCINEURIN B 2 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vifa2g02715 216 ProSiteProfiles EF-hand calcium-binding domain profile. 107 142 IPR002048 GO:0005509
Vifa2g02715 216 CDD EFh 111 181 IPR002048 GO:0005509
Vifa2g02715 216 Gene3D - 20 214 - -
Vifa2g02715 216 SUPERFAMILY EF-hand 23 205 IPR011992 -
Vifa2g02715 216 Pfam EF-hand domain pair 111 180 IPR002048 GO:0005509
Vifa2g02715 216 SMART efh_1 111 139 IPR002048 GO:0005509
Vifa2g02715 216 SMART efh_1 74 102 IPR002048 GO:0005509
Vifa2g02715 216 SMART efh_1 155 183 IPR002048 GO:0005509
Vifa2g02715 216 PRINTS Recoverin family signature 125 143 - -
Vifa2g02715 216 PRINTS Recoverin family signature 78 99 - -
Vifa2g02715 216 PRINTS Recoverin family signature 171 191 - -
Vifa2g02715 216 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Vifa2g02715 216 Pfam EF-hand domain pair 52 97 IPR002048 GO:0005509
Vifa2g02715 216 FunFam calcineurin B-like protein 3 20 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02715 Vifa-Chr2 747520220 747521214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02715 28 216 EF-hand Containing Proteins AT5G24270 73.545 4.35e-99 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02715 K06268 - gmx:100811649 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02715 2 747520220 747521214 Vifa2g02715 2 747520220 747521214 ECH