Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02680 ATGGAGGAGTTGCCGGAGCTGCCGGAGTGTCCGGTTTGTCTTCAAAACTACGACGGCGAAAACGCGATTCCTCGAGTACTATCATGCGGCCACACCGTTTGTGAAGCTTGTCTTGTGGAGCTTCAGGAGCGGTTTCCGAACACTATTCGTTGCCCTGCGTGTACTCAACTCGTTAAATACTCTCACAATCAAGGTCCGTCTTCTCTTCCTAAAAATATTGACCTTCTTAGAATCTGCCTCGAACAACACTCTTCATCTAAACATCAGAAATCGAATCAGAAATCAAATCATGAACGGTATTTGATCAATTATGGATATTCCTCTCGGTTTTGGTCTGATGAGTTTTATGCCGCTTGGAAGGATTGGATTCTTCCGAACGATGTCGTTTCGGTTGACGAGAATGGTTTTGGTAGGTTTAGTTCAGGTTCTAAAGGTAGGGTTTGCTTCGGAGTTAATAGAACTGTGAGTCTCGTTCCTGTTGTTAGTTTGGTTCTGGTTAGTGATTTGAAGTTTAAGTTTAGTTATGTTGCTTGGGTTATTAAGTGCTTGGAGGGGATGAATGAGGTTGTGAGGGAGGGGTTGGGTTTGATTCTAGAAGGTTCTGTGAGGCAGGGTAGGCTTTGTAGGGTTTATGGGTTATGGAGTGAGGTTGTTGGTGGTAGTTTGTATCTGGTGTGTGAGAGGCACAGTGGTAGGTTTTTGGATGAGTATGGTGGATTGAGAAGTGTGAATGGGGATGGTTTGGGATTGGATAAAGGCGGGGTTTGTCATTTTGCGACGATTGCGAAGAGTATTGTTGAAGGTGTCATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATTTTTGGGACTTGAATGCTTCTCTTTTGATGAGCTTGGTGGTGTTTGTATTGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGATTGTGGATCGGGTTTCTGGTGGCGCGGGTGATGATCACGAAGCCATGTGTAGGGATTGTTTGAACAATGAGCTTTTTGTTAGCCCGGAGGTTTTGTCTATGTTATTGCACGAGGAGATTGTCAACCCTGAGAGTGGGGATTTGAGATATCCAATTGGGTATGGCTCAGATGTGTGGTCGTTGGCTTGTGTGTTGCTGCAGCTTCTTTTGAGAAATGCGCTCCCTCGGATTACTTTGCAAATGAGTGCAGAGAATGGTATTGATGTCTCGGCTAGTTACATTTCTTGGGTAGAGAAAGTTTATTCTGTTTTGGAAGAAAAAATTGGTTCTGAAAACCTATCACTTAAACAGACTCTTTGCAAATGTTTGGACATCAATCCTGGAAACCGTCCAGATGTAATGGATGTAAGGAAATGCATTCAAGATGTGCTAGTCAAACATCAATTTGGCTTTTTGGGAGATACAGAGGTCGCAGTAAATAGGAACAACACGGGTCACCCTGTGATTCTTGCTAAGTTGTGTCAGTTGCTTCATGAAAGTTCTAAGGAGCCGAGAGATCATGAGTTGCTGGTGAAAGTAAATGGCGGTCAACCTGAGTTCCTTCAAGGTGCGGAAAATATATCTGACGAAGACTTCGCTGCTAGCTTATCTCAGGGAATGACTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTCTATCACTGGTTTAGCTGTAGGAGGGGGATATTTGTTTAGCTCCTCTTTTGATAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATGTACATACATTTAGAGGTCATGAAAATAAAGTTATGGCTCTAGTTTATGTTGATGGCGAAGAATCATTGTGTATAAGTGGTGACGGTGGTGGGGGCATATTTTTGTGGGATATTGCTGCATCTCTTAGGCAAGAACCCTTGAGGAAGTGGTATGAGCCAAAGGATTGGCGCTTTAGTGGTATCCATTCGATGACTACTTTCGGAAGTCTTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCAATAAAGGATGGAACTTTGATGTGCACAATGAATGGCCACAAATCTGTAGTTTCCACACTTTCAGTATGTGATGATGTTCTTTACAGTGGTAGTTGGGATGGAACTATCCGATTGTGGAGTCTTAATGATCACAGCCCTTTGGCGATACTAGGGGAAGATTTGCCTGGAGAGAAGAAGTCTATCCTGGCTATTACTGTCAGTAGGAATTTGCTGGTTGCCGCATACGAGAATGGATGCATAAAGGTCTGGAGTAACGACGTGCTCATGACTTCTAAAACATTGCATAGTGGTGCAATTTTTGCGATGAGTATGCAGGGAAAATGTCTCTATACAGGAGGTTGGGATACAAATGTTAATATACAGGAATTATCAGGAGACGAGTTAGAACTGAATGTCAACGCATTTGGATCCATTCCTTCGGGTTCTGTTGTGACAGCTATATTATGCAGTCAAGGAAAACTTTTCGTTGGATGTGGCCACAAGTCTATCAAGGTTTATGGTGCTAAATAG 2472 0.4308 MEELPELPECPVCLQNYDGENAIPRVLSCGHTVCEACLVELQERFPNTIRCPACTQLVKYSHNQGPSSLPKNIDLLRICLEQHSSSKHQKSNQKSNHERYLINYGYSSRFWSDEFYAAWKDWILPNDVVSVDENGFGRFSSGSKGRVCFGVNRTVSLVPVVSLVLVSDLKFKFSYVAWVIKCLEGMNEVVREGLGLILEGSVRQGRLCRVYGLWSEVVGGSLYLVCERHSGRFLDEYGGLRSVNGDGLGLDKGGVCHFATIAKSIVEGVIALNLEGLVAGFLGLECFSFDELGGVCIDLNEVLVMGRKIVDRVSGGAGDDHEAMCRDCLNNELFVSPEVLSMLLHEEIVNPESGDLRYPIGYGSDVWSLACVLLQLLLRNALPRITLQMSAENGIDVSASYISWVEKVYSVLEEKIGSENLSLKQTLCKCLDINPGNRPDVMDVRKCIQDVLVKHQFGFLGDTEVAVNRNNTGHPVILAKLCQLLHESSKEPRDHELLVKVNGGQPEFLQGAENISDEDFAASLSQGMTELKDLQGHLGSITGLAVGGGYLFSSSFDKTVRVWSLQDFSHVHTFRGHENKVMALVYVDGEESLCISGDGGGGIFLWDIAASLRQEPLRKWYEPKDWRFSGIHSMTTFGSLLYTGSGDRTIKAWSIKDGTLMCTMNGHKSVVSTLSVCDDVLYSGSWDGTIRLWSLNDHSPLAILGEDLPGEKKSILAITVSRNLLVAAYENGCIKVWSNDVLMTSKTLHSGAIFAMSMQGKCLYTGGWDTNVNIQELSGDELELNVNAFGSIPSGSVVTAILCSQGKLFVGCGHKSIKVYGAK 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02680 823 CDD RING-HC_TRIM32_C-VII 8 57 - -
Vifa2g02680 823 SUPERFAMILY RING/U-box 6 62 - -
Vifa2g02680 823 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 566 - -
Vifa2g02680 823 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Vifa2g02680 823 SUPERFAMILY Protein kinase-like (PK-like) 257 454 IPR011009 -
Vifa2g02680 823 PRINTS G protein beta WD-40 repeat signature 641 655 IPR020472 -
Vifa2g02680 823 PRINTS G protein beta WD-40 repeat signature 681 695 IPR020472 -
Vifa2g02680 823 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Vifa2g02680 823 SMART serkin_6 133 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02680 823 SUPERFAMILY WD40 repeat-like 528 820 IPR036322 GO:0005515
Vifa2g02680 823 SMART ring_2 10 54 IPR001841 -
Vifa2g02680 823 ProSiteProfiles Protein kinase domain profile. 133 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02680 823 Pfam RING-type zinc-finger 10 52 IPR027370 -
Vifa2g02680 823 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 703 IPR001680 GO:0005515
Vifa2g02680 823 Pfam WD domain, G-beta repeat 531 564 IPR001680 GO:0005515
Vifa2g02680 823 Pfam WD domain, G-beta repeat 660 694 IPR001680 GO:0005515
Vifa2g02680 823 PANTHER - 7 772 IPR044715 -
Vifa2g02680 823 Gene3D - 511 615 IPR015943 GO:0005515
Vifa2g02680 823 Gene3D - 616 823 IPR015943 GO:0005515
Vifa2g02680 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Vifa2g02680 823 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 573 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 697 738 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 739 776 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 567 607 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 657 694 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 613 654 IPR001680 GO:0005515
Vifa2g02680 823 SMART WD40_4 527 564 IPR001680 GO:0005515
Vifa2g02680 823 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Vifa2g02680 823 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 663 IPR001680 GO:0005515
Vifa2g02680 823 Gene3D Transferase(Phosphotransferase) domain 1 314 457 - -
Vifa2g02680 823 ProSiteProfiles Zinc finger RING-type profile. 10 55 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02680 Vifa-Chr2 716799111 716804146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02680 549 766 Acyl Lipid Metabolism Gene Families AT3G18860 30.702 2.80e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02680 - K03070 lja:Lj1g3v0874380.1 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02680 2 716799111 716804146 Vifa2g02680 2 716799111 716804146 ECH