Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02678 ATGATCAACATTTCCAACCCTAGAAATTTTCTACTCCTCAAATACCCATCGTTCGCCAAAATGTTCAGCACATGCGAACAAATTCCAGATTTTGCAGAACTAACAGAAACCGTGTGCAACGTTATGATGTCTTCTCCAGCAGTCACACTCGACACAGCTCTTAACCAAACAGGCGTTAGGGTTTCTCCTGAATTAGTGGAAACTGTCCTCAAGAGGTTCGAGAATGCTGGTATGTCGGCGTTCCGGTTCTTCGAATGGGCCGAGAATCAGCGAAACTACTCGCATTCGGTAAGGGCTTATCACTTGATGATTGAGTCTTTGTTGAAGATTAGGCAGTATCAGATTGTGTGGGACCTTGTTGGTTCAATGAGGAAAAAGGGTATGGTAAATGTTGAAACTTTTTGTATTATCATGAGAAAATATGCTAGGGCTCATAAGGTTGATGAAGCTGTTTATACTTTTAATATAATGGATAAATACGATACGCCGCAGAATCTTGCGGCGTTTAATGGCTTGTTGAGTGCTTTGTGTAAGTCTAGGAACGTGAGGAAGGCTCAGGAGATTTTTGATAGTATGAAGGGACGGTTTGAGCCGGATTCGAAGAGTTTTAGTATATTGCTCGAAGGGTGGGGAAAGGAACCGAATCTTCCCAAAGCAAGAGAAGTTTTTGATGAGATGGTTTCTGCAGGGTGCAATCCGGACATTGTTACTTATGGTATTATGGTTGATATTCTTTGCAAGGCGGGAAGGGTTGATGAAGCTGTTGAGGTTGTCAAGGATATGGATGATAATAATTGCAAGCCGACATCGTTTATTTATAGTGTTCTTGTTCATACTTATGGAGTGGAGAATCGGATTGAGGATGCAATCGATACATTCATGGAGATGGAAAGGAATGGAATTGCGGCCGATGTTGTGGTTTATAATGCATTGATTGGTGCTTTTTGTAAGGCGAACAAGTTAAAAAATGTGTATAGGGTGTTAAGAGAGATGGAGAGTAATGGTATTGCTCCGAATCCAAGGACCTGTAATGTTATCATGAGCAGTTTGATTAGCCAAGGAGAGACTGATAAAGCTTTTAGTGTGTTTCGCCGGATGATTAAGCTGTGTGAGCCTGATGCTGACACGTATACGATGCTGATAAAGATGTTTTGTGAGAAGAATGAAGTGGATATGGCTTTGAAAATATGGAGGTATATGAAGTCGAAACAGTTTGTCCCAAGCTTGCACACTTTTTCAGTGCTTATCAATGGACTGTGTCAAAAGGGAAATGTTGTGAAAGCTTGTATTTTGCTGGAAGAGATGATAGAGAAAGGAATTCGACCATCACGGATTACATTTGCGAAGTTAAGACAGTTACTTATAAAGGAAGGGAGAGAAGATGTGCTAAAGTTTCTGCATGAGAAAATAAATCTTCTAGTTAAGGAACCTTTGTATGATTAA 1443 0.4047 MINISNPRNFLLLKYPSFAKMFSTCEQIPDFAELTETVCNVMMSSPAVTLDTALNQTGVRVSPELVETVLKRFENAGMSAFRFFEWAENQRNYSHSVRAYHLMIESLLKIRQYQIVWDLVGSMRKKGMVNVETFCIIMRKYARAHKVDEAVYTFNIMDKYDTPQNLAAFNGLLSALCKSRNVRKAQEIFDSMKGRFEPDSKSFSILLEGWGKEPNLPKAREVFDEMVSAGCNPDIVTYGIMVDILCKAGRVDEAVEVVKDMDDNNCKPTSFIYSVLVHTYGVENRIEDAIDTFMEMERNGIAADVVVYNALIGAFCKANKLKNVYRVLREMESNGIAPNPRTCNVIMSSLISQGETDKAFSVFRRMIKLCEPDADTYTMLIKMFCEKNEVDMALKIWRYMKSKQFVPSLHTFSVLINGLCQKGNVVKACILLEEMIEKGIRPSRITFAKLRQLLIKEGREDVLKFLHEKINLLVKEPLYD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 342 368 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 272 304 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Vifa2g02678 480 NCBIfam pentatricopeptide repeat 168 194 IPR002885 -
Vifa2g02678 480 Pfam PPR repeat 133 159 IPR002885 -
Vifa2g02678 480 Pfam PPR repeat 272 301 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Vifa2g02678 480 Pfam PPR repeat 230 261 IPR002885 -
Vifa2g02678 480 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Vifa2g02678 480 Gene3D Tetratricopeptide repeat domain 263 330 IPR011990 GO:0005515
Vifa2g02678 480 Gene3D Tetratricopeptide repeat domain 42 193 IPR011990 GO:0005515
Vifa2g02678 480 Pfam PPR repeat family 165 209 IPR002885 -
Vifa2g02678 480 Pfam PPR repeat family 304 350 IPR002885 -
Vifa2g02678 480 Pfam PPR repeat family 372 421 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vifa2g02678 480 SUPERFAMILY TPR-like 96 398 IPR011990 GO:0005515
Vifa2g02678 480 Gene3D Tetratricopeptide repeat domain 331 477 IPR011990 GO:0005515
Vifa2g02678 480 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 198 470 - -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vifa2g02678 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02678 Vifa-Chr2 716790383 716791825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02678 28 461 Glycosyltransferase AT1G05670 22.500 1.93e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02678 - - gmx:100790096 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02678 2 716790383 716791825 Vifa2g02678 2 716790383 716791825 ECH