Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02650 ATGGTGAAATTCGTTCCGATTTTCGGTTTTCTGTTCTCTCTTCTTGTGTTGCTTCCTTCTCAGATCTCAGCTGAGGAACCTGAGGCCAAGGAATTCGTTCTCACATTGGATAACACCAATTTCCATGACACTGTCAGCAAGCACGATTTCATCGTCGTCGAGTTTTACGCTCCTTGGTGTGGTCACTGTAAGCAGCTTGCTCCAGAGTATGAGAAAGCTGCTTCTATCTTGAGCACTCTTGAAACTCCAATTGTTTTGGCTAAAGTTGATGCCAATGAAGAGAAGAACAAGGACCTTGCATCCGAGTATGATGTTAAGGGGTTCCCAACCATTAAGATTTTGAGGAATGGTGGAAAGAACAGTCAGGAATACAAAGGTCCTCGTGAAGCCGACGGTATCGTTGAATACTTGAAGAAGCAAAATGGGCCTGCAACTACTGAAATTAAATCTGCCGATGAAGCTACTGCTTTTGTTGGTGAAAATAAAATTGTTATTGTTGGAGTTTTCCCTAAATTCTCTGGTGAGGAGTTTGATAACTTTCTTGCAGCAGCAGATAAGTTGCGTGCTGACTATGAAATTGGTCACACCTTGGATGCCAAACACCTCCCAAGGGGAGATTCGTCTGTGTCTGGCCCTGTAGTTAGGTTATTTAAGCCATTTGATGAGCTCTTTGCTGACTCCAAGGATTTCAATGTTGAAGCTATAGAGAAATTTGTTGAAGCATCCAGTGTCCCCCTCGTGACTATCTTCAACAATGAACCAAGCAATCACCCTTTTGTTGTCAAATTCTTTAACTCCCCCAACGCAAAGGCAATGTTGTTCACCAACTTCACTTCCACAAGTACTGAAGCTTTTAAATCAAAATACCGTGAAATTGCTGAGCAATACAAAAACCAGGGAATAAGCTTTCTTATCGGAGATGTTGAGTCGAGCCAAGGTGCCTTCCAGTATTTTGGACTTAAGGAAGACCAAGTACCTCTAATTATTATTCAGCACGCTGATGGCAAGAAATTTTTCAAGCCCAATTTGGAACCAGATCACCTTGCAGCTTGGTTGAAGGAATACAAGGATGGAAAAGTTGCTCCATTTGTCAAGTCTGAGCCTATCCCTGAGACTAACAACGAACCAGTTAAGGTGGTAGTTGGGGAAACTCTTCCGGAAATAGTTTTCAACTCTGGAAAGAATGTTTTGCTTGAGTTTTATGCCCCATGGTGTGGTCACTGCAAATCCTTGGCTCCAATCTTGGATGAAGTTGCTGTCTCATTTCAAAGTGATCCCGATGTTGTTATTGCCAAACTGGATGCAACTGCCAACGATATCCCAAGCGAAACCTTTGAGGTCCAAGGTTATCCAACATTGTACTTCAGGTCCGCAAGTGGAAAGATATCACAATATGACGGTGGTAGGACAAAGGAAGACATCATAGAATTCATTCAAAAGAACAAGGATACAACTGGTGCTGCTCAGCAAGAAGTAGAACAGCCAAAGGCTCCTGCTCAGCAAGAAGTAGAACAACCTAAGGATGAGCTTTGA 1533 0.4273 MVKFVPIFGFLFSLLVLLPSQISAEEPEAKEFVLTLDNTNFHDTVSKHDFIVVEFYAPWCGHCKQLAPEYEKAASILSTLETPIVLAKVDANEEKNKDLASEYDVKGFPTIKILRNGGKNSQEYKGPREADGIVEYLKKQNGPATTEIKSADEATAFVGENKIVIVGVFPKFSGEEFDNFLAAADKLRADYEIGHTLDAKHLPRGDSSVSGPVVRLFKPFDELFADSKDFNVEAIEKFVEASSVPLVTIFNNEPSNHPFVVKFFNSPNAKAMLFTNFTSTSTEAFKSKYREIAEQYKNQGISFLIGDVESSQGAFQYFGLKEDQVPLIIIQHADGKKFFKPNLEPDHLAAWLKEYKDGKVAPFVKSEPIPETNNEPVKVVVGETLPEIVFNSGKNVLLEFYAPWCGHCKSLAPILDEVAVSFQSDPDVVIAKLDATANDIPSETFEVQGYPTLYFRSASGKISQYDGGRTKEDIIEFIQKNKDTTGAAQQEVEQPKAPAQQEVEQPKDEL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02650 510 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Vifa2g02650 510 Gene3D Glutaredoxin 142 245 - -
Vifa2g02650 510 NCBIfam protein disulfide-isomerase domain 37 140 IPR005788 GO:0003756
Vifa2g02650 510 NCBIfam protein disulfide-isomerase domain 381 481 IPR005788 GO:0003756
Vifa2g02650 510 ProSiteProfiles Thioredoxin domain profile. 355 483 IPR013766 -
Vifa2g02650 510 CDD PDI_a_family 34 137 - -
Vifa2g02650 510 MobiDBLite consensus disorder prediction 485 510 - -
Vifa2g02650 510 ProSiteProfiles Thioredoxin domain profile. 20 142 IPR013766 -
Vifa2g02650 510 PANTHER PROTEIN DISULFIDE ISOMERASE 11 507 - -
Vifa2g02650 510 CDD PDI_a_PDI_a'_C 376 478 - -
Vifa2g02650 510 Gene3D Glutaredoxin 371 486 - -
Vifa2g02650 510 PRINTS Thioredoxin family signature 104 115 - -
Vifa2g02650 510 PRINTS Thioredoxin family signature 51 59 - -
Vifa2g02650 510 PRINTS Thioredoxin family signature 59 68 - -
Vifa2g02650 510 CDD PDI_b_family 146 240 - -
Vifa2g02650 510 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Vifa2g02650 510 FunFam Protein disulfide-isomerase 141 241 - -
Vifa2g02650 510 CDD PDI_b'_family 260 356 - -
Vifa2g02650 510 FunFam Protein disulfide-isomerase 372 485 - -
Vifa2g02650 510 Pfam Thioredoxin-like domain 169 354 - -
Vifa2g02650 510 FunFam Protein disulfide-isomerase 242 371 - -
Vifa2g02650 510 SUPERFAMILY Thioredoxin-like 148 253 IPR036249 -
Vifa2g02650 510 Gene3D Glutaredoxin 246 370 - -
Vifa2g02650 510 Gene3D Glutaredoxin 21 141 - -
Vifa2g02650 510 SUPERFAMILY Thioredoxin-like 243 374 IPR036249 -
Vifa2g02650 510 SUPERFAMILY Thioredoxin-like 343 484 IPR036249 -
Vifa2g02650 510 NCBIfam protein disulfide-isomerase 33 510 IPR005792 GO:0003756
Vifa2g02650 510 FunFam Protein disulfide-isomerase 22 140 - -
Vifa2g02650 510 Pfam Thioredoxin 33 139 IPR013766 -
Vifa2g02650 510 Pfam Thioredoxin 378 480 IPR013766 -
Vifa2g02650 510 SUPERFAMILY Thioredoxin-like 33 143 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02650 Vifa-Chr2 708041340 708044246 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02650 K09580 - gmx:100170705 837.025