Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02622 ATGGAGATCAATGCCAATGATTGGGAAGATTCAAAATTGGTGGTCCTCATCACGGGTTGTTCCAGTGGAGGAATAGGTCACGCGCTTGCACGCTCCTTCGCCGCCAACAATTGTATAGTGGTGGCCACCAGCAGGTCGCGTTCCACCATGGTGGATTTGGAAGACCACCCATATTTTTTTTTACAAGAACTCGATATTCTGTCCGATGAGAGTGTGAACAGAGTTGTCGATACTGTTATAAATAAATACGGTGGCATTGATATTCTTATCAATAACGCTGGTGTTCCATGTGTCGGTCCAATCGTAGATATTCCTCTATCGACGATCAAAAACACCTTTGAAACCAATGTTTTTGGTTCTTTGAGAATGGTGCAGGCGGTGGTTCCTCACATGGCAGCTAGGAAAAAGGGAAAGATTGTGAATGTTGGGAGTATTGTGGGGTTGGCCGCTAGACCTTGGACGGGTGCCTATGCTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGACGCATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTGTTGGTGGCTATGTGAAATCAAATATGGTAAAATCGGTCCTGACCACCCACGACAACATGCTTGAGTGGAAACTATTCAAATCATTTGAAGCAGGATTCAGAGAGAGACTTGTACGTTCTCAGAGTTCAAAATCAACACATGCAGACGAGTTTGCTAAACAAACTGTAGCTGCTGTCCTTAGAAAGAAATCACCTGCATGGTTCTCCTATGGTCAATATACTACTGTCATGGCTATCATGTACCATTTACCTCTTTGTGTTAGAGACTTTCTTTTTAAGAAAGACATGAAACTCTGA 852 0.4296 MEINANDWEDSKLVVLITGCSSGGIGHALARSFAANNCIVVATSRSRSTMVDLEDHPYFFLQELDILSDESVNRVVDTVINKYGGIDILINNAGVPCVGPIVDIPLSTIKNTFETNVFGSLRMVQAVVPHMAARKKGKIVNVGSIVGLAARPWTGAYAASKAALHALTDALRLELGHFGIDVVNVVGGYVKSNMVKSVLTTHDNMLEWKLFKSFEAGFRERLVRSQSSKSTHADEFAKQTVAAVLRKKSPAWFSYGQYTTVMAIMYHLPLCVRDFLFKKDMKL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02622 283 Coils Coil 278 283 - -
Vifa2g02622 283 Pfam short chain dehydrogenase 14 199 IPR002347 -
Vifa2g02622 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Vifa2g02622 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 268 IPR036291 -
Vifa2g02622 283 CDD 17beta-HSD-like_SDR_c 14 258 - -
Vifa2g02622 283 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 11 263 - -
Vifa2g02622 283 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Vifa2g02622 283 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Vifa2g02622 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Vifa2g02622 283 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Vifa2g02622 283 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vifa2g02622 283 Gene3D - 13 268 - -
Vifa2g02622 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vifa2g02622 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Vifa2g02622 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Vifa2g02622 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 11 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02622 Vifa-Chr2 697694452 697695473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02622 16 196 Lipid Metabolism Gene Families AT1G67730 31.633 5.64e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02622 - - gmx:100775989 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02622 2 697694452 697695473 Vifa2g02622 2 697694452 697695473 ECH