Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02619 ATGTCATCAAATTCGAACTACCCGATTCTGGATGATAAGCCCATTAATCAGTGGAAGGTTACTGAGCTGAGAGAGGAGCTGAAGAAAAGAAAGTTAGCAACCAAAGGTTTAAAGGAGGATTTAATCAATCGTTTAGATGAAGCCATTCGTGAAGAAAGGGAGGGTGCTGAGGCTTCCCCTGAACAGGAGGAGGATGCCGAGGCTTCCCCCGAACAGGAAGAAGCTGCTGTTGAAGCTTCCCCTGAACAGGAGGCTGCCGAGCCTTCCCCTGAACAGGAGGCTGCCGAGCCTTCCCCTGAACAGGAGGAGGCCACGTTAGAGGCTTCCACTAAAAAGGAGGAGGCCACGTTAGAGGCTTCCACTAAAAAGGAGGAGGCTGCTGAGCCTTCCCCTGAACAGGAGGAGGCCGCGGTAGAGGCTTCCACTGAAAAGGAGGAGGCTGCGGTTGAGGCTTCGCCTGAAAAGGAGGCTGCGGTTGAGGCTTCGCCTGAAAAGGAGGCTGAAAAGGCTTCTCCTGAACAGAAAACTGCAGAGGGTTTGGAGAAGGATGAGGCTAATGGTTTACACACTCAAGATGGGGTAAAAGATTCCCAGACTGATAATGTGGATGCTGAAGTGGTTGATGCAACTGCAAGGGAAAGCTTCCAAACATTGGAAACTTCTGAAAAGGGGGATTCTGGTGTAGTGGAACCATTTGAAAAGGAAAATGTAGTGAAGGTTCCAGAGGTTGTGGATAATGACAGTATTAAGAATGTTGAGCAAGACGGTGTTACTGACCCAGTTGACGAAAATAATACTGTTTCGGCCATGGATCTAGATAGTGAACATGCGGTTTTGCCACTTGGTGTAGAATCTGATAACGCGGGAGAGGAGGTAGTTGCCCATCCTTCCAATGTAGAGACCACTGTGGAGACTACTGTGGAGACCACTGTTACGGTCACTGAGATTGTAGAAACAGAAGTAGTAGTCACTGGTCAGGATTCGGATAGTTCAGAGAAGAGTGATGAGCATTCAGCAATCAAGCTAGAGAATAAGGAATCAAGGGCGCAGCTGGATAATGAAGAGTCAAAGCTCCAACTGGAGTGTGACCCGAAGCCTACCCGCGACGATCTCATGCCCATTTCTTCTGCTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATGTCAAATTAGAACAAGATAATGTTAGGCCAGAGATGGTGGAAGAACCATCATCCAGAACTGACGTACCTGTTTATGATGAATCGCATTCAATGGATGTTGGAGGGATGCATGAAAAAAAGTCATATGTTGAAGAAAATAACAACAATGTTACAAGTCCAGACTTGAACAAAACCAATAGTAGTGATGATGTAGGATATCCAGAAAAATTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGACTTACCTGAGACTAGGCAATATGATTCTAAGTTTAATGTCGATGAACTTAGGGACAAAGTCAAAAATAATGAAGTGCCTATGGTCAATGAAGAAAGCAAACCAATGGTTGAGGGAGATGGTGTATCCACAAGAAAAAGCGATACCCACCAAGATATTGACATTAGTCCTGTTTCCTTGACTGAGAAGCGAAAATACCCTGAACAAACATTAGTTGGAAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGATACAACTAAAGAGTCAGATCTGCAAGGCACTACTCCCAGACCCGCCATTACACCCAAGGATGGACAAATTACTCTGAAGCGCAGCTTTTCTAGGTCTAATTCCTCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCACGAAGGACCCCGACTAATTCCCTCAGGATTGATCAATTCCTTCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAAACTGGGAGTGTGAGCAGTTTTTGGATGGATCAAATAAAGACCCATTGCTATGTTACTTACTCGTCCACCGAAGAGGCCGTTGAGACACGAAATGCTGTGTATAACTTGCAATGGCCTCCAAATGGCGGGCGGCTCTTGGTTGCCGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGCTAGAAGCTCCTCCTACTCCAACTGCCTCTGTAAACAGTGTTCCAACACTTCCTCCCGCACCACCTTTATCACAGCCGGATCCTTCCCCGCGTCAGCACAGGGAGCAGCATCTTCCAGTTGCTCTCCCACCTCCACCACCATTGTCAAGGCCCCCACCAGTTGCAAGGGAACGTCTTCCATCGCCACCACCCCTTCCTGAGAAAGTGGAACCACCTATTGTCACTCTGGATGACCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCGGCACAGAGTAAAAGTACGAGGCATTAA 2514 0.4606 MSSNSNYPILDDKPINQWKVTELREELKKRKLATKGLKEDLINRLDEAIREEREGAEASPEQEEDAEASPEQEEAAVEASPEQEAAEPSPEQEAAEPSPEQEEATLEASTKKEEATLEASTKKEEAAEPSPEQEEAAVEASTEKEEAAVEASPEKEAAVEASPEKEAEKASPEQKTAEGLEKDEANGLHTQDGVKDSQTDNVDAEVVDATARESFQTLETSEKGDSGVVEPFEKENVVKVPEVVDNDSIKNVEQDGVTDPVDENNTVSAMDLDSEHAVLPLGVESDNAGEEVVAHPSNVETTVETTVETTVTVTEIVETEVVVTGQDSDSSEKSDEHSAIKLENKESRAQLDNEESKLQLECDPKPTRDDLMPISSAPENQVSEVNPSLGSQVKSDSFSTDSVSINEKNELKDTIIANNVKLEQDNVRPEMVEEPSSRTDVPVYDESHSMDVGGMHEKKSYVEENNNNVTSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELRDKVKNNEVPMVNEESKPMVEGDGVSTRKSDTHQDIDISPVSLTEKRKYPEQTLVGNNEPAKRQRRWNTDTTKESDLQGTTPRPAITPKDGQITLKRSFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAVETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEAPPTPTASVNSVPTLPPAPPLSQPDPSPRQHREQHLPVALPPPPPLSRPPPVARERLPSPPPLPEKVEPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQSKSTRH 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02619 837 MobiDBLite consensus disorder prediction 58 80 - -
Vifa2g02619 837 Pfam RNSP1-SAP18 binding (RSB) motif 792 834 IPR032552 -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 374 406 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 426 451 - -
Vifa2g02619 837 SUPERFAMILY SAP domain 15 52 IPR036361 -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 736 753 - -
Vifa2g02619 837 SUPERFAMILY RNA-binding domain, RBD 637 725 IPR035979 GO:0003676
Vifa2g02619 837 MobiDBLite consensus disorder prediction 532 643 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 465 484 - -
Vifa2g02619 837 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 206 - -
Vifa2g02619 837 CDD RRM_ACINU 643 723 IPR034257 -
Vifa2g02619 837 SMART sap_9 15 49 IPR003034 -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 245 265 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 540 563 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 320 406 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 486 511 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 137 202 - -
Vifa2g02619 837 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 329 368 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 48 233 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 425 451 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 592 629 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 105 130 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 465 511 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 764 795 - -
Vifa2g02619 837 Coils Coil 337 357 - -
Vifa2g02619 837 MobiDBLite consensus disorder prediction 727 797 - -
Vifa2g02619 837 Pfam SAP domain 15 49 IPR003034 -
Vifa2g02619 837 Gene3D SAP domain 15 61 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02619 Vifa-Chr2 696176927 696180089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02619 K12875 - gmx:100786288 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02619 2 696176927 696180089 Vifa2g02619 2 696176927 696180089 ECH