Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02615 ATGCCGTCACGGTGGCGGTTCTTGCTTCCGTTCCTCCTCTCGGTGACAGTTACTTCCGCAATGCAGGTTCCGACCACCTTTTCCACCAAGCTGGTTCACCGATTCTCCGAAGAAATGAAACCGGTTCGGGTTCAGACCGGCGACTGGCCGGACCGGCGGAGCATGCAGTACTACCAGAGGCTTCTTAGAAACGACTTTGTCAGGCATAAAGTTAACCTCGGTGCCGCTCGTCACCAGCTTCTGTTTCCTTCTCATGGTAGCAAAACGATGTCGTTTGGAAACGACTTGGCCTGGTTACATTACACGTGGATTGATATAGGGACCCCGAGTACTTCGTTTCTTGTAGCATTGGATGCTGGGAGCGATCTTCTTTGGGTTCCTTGTGATTGTATACAGTGTGCTCCTTTGTCTGCCAGTTTCTATTCCAGTTTGGATAGAGATCTGAATGAGTATAGTCCCTCTAGGTCGTTATCCAGCAAGCATATATCTTGCAGCCATCGGTTATGTGATATGGGTTCAAATTGTAAAACTTCCAAGCAGCAGTGTCCGTATACTATCAATTACACATCAGAAAATACATCAAGTTCTGGGTTGTTAGTTGAGGACATATTGCATCTTCAATCCGGCGACGGCGGTGGCAGCTCATCTAACTCTTCTGTTCAGGCTTCAGTTGTTGTCGGGTGTGGTATGAAGCAAAGTGGCGAGTATTTGAATGGTGATGCTCCAGATGGTGTCATTGGTTTGGGACCTGGGCAGGGTTCAGTTCCGAGTTTTCTTGCTAAATCAGGACTAATCCGTGATTCTTTTTCGTTGTGCTTTAATGAAGATGATTCCGGTAGATTATTTTTTGGTGATCAGGGATCAACTGTGCAACAGTCTACTCCATTCTTGCCCTTGGATGGAATATTTTCAACCTACATTGTCGGAGTGGAGGCCACTTGTATTGGAAATTCTTGTCCTAAAGTAACAAGTTTTAATGCTCAGTTTGATAGTGGAACGTCATTTACGTTTCTTCCGGGTCATGCATATGAAGCAATAGCTAAGGAGTTTGACAAACAAGTAAATGCTACAAGATCAACCTTTCAAGGATCTTTTTGGGAGTATTGTTATGTACCCAGTTCGCAACAGCTGCCTAAGGTTCCCACATTGACACTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATATTACAACGAACAGGGAATTGATGGATTTTGTTTAGCAATACAGCCAACCGAAGGGGATATGGGAACTATTGGACAAAATTTCATGACGGGATACCGGTTGGTATTTGATAGGGAAAACAAGAAGCTAGCGTGGTCACGTTCAAATTGTCAGGATCTCAGTCTTGGTAAGAAGATGCCCCTCTCCCCTCCAAACAAGACATCGTCAAACCCGCTGCCCGCAGATGAGCAGCAAAGAATCAAAGGGCATGCAGTGGCTCCAGCTGTTGCTGGAAAGGCTCCTCAAAATTCTTCAGTTGTTTCATCTCAGACATCTCAAATGATTTCATACTGGCAACATTGGCACTGCTATTGTTTGCTTCTATTTCAACTTCTATCGGTCTTTTACTGA 1593 0.4482 MPSRWRFLLPFLLSVTVTSAMQVPTTFSTKLVHRFSEEMKPVRVQTGDWPDRRSMQYYQRLLRNDFVRHKVNLGAARHQLLFPSHGSKTMSFGNDLAWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSASFYSSLDRDLNEYSPSRSLSSKHISCSHRLCDMGSNCKTSKQQCPYTINYTSENTSSSGLLVEDILHLQSGDGGGSSSNSSVQASVVVGCGMKQSGEYLNGDAPDGVIGLGPGQGSVPSFLAKSGLIRDSFSLCFNEDDSGRLFFGDQGSTVQQSTPFLPLDGIFSTYIVGVEATCIGNSCPKVTSFNAQFDSGTSFTFLPGHAYEAIAKEFDKQVNATRSTFQGSFWEYCYVPSSQQLPKVPTLTLMFQQNNSFVVYNPVFVYYNEQGIDGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSLGKKMPLSPPNKTSSNPLPADEQQRIKGHAVAPAVAGKAPQNSSVVSSQTSQMISYWQHWHCYCLLLFQLLSVFY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02615 530 MobiDBLite consensus disorder prediction 455 476 - -
Vifa2g02615 530 Pfam Xylanase inhibitor N-terminal 101 285 IPR032861 -
Vifa2g02615 530 Pfam Xylanase inhibitor C-terminal 326 447 IPR032799 -
Vifa2g02615 530 FunFam Aspartyl protease family protein 1 86 285 - -
Vifa2g02615 530 SUPERFAMILY Acid proteases 96 452 IPR021109 -
Vifa2g02615 530 MobiDBLite consensus disorder prediction 455 478 - -
Vifa2g02615 530 Gene3D Acid Proteases 286 453 IPR021109 -
Vifa2g02615 530 PRINTS Pepsin (A1) aspartic protease family signature 327 338 IPR001461 GO:0004190|GO:0006508
Vifa2g02615 530 PRINTS Pepsin (A1) aspartic protease family signature 423 438 IPR001461 GO:0004190|GO:0006508
Vifa2g02615 530 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Vifa2g02615 530 PANTHER ASPARTYL PROTEASES 14 444 IPR001461 GO:0004190|GO:0006508
Vifa2g02615 530 FunFam Aspartyl protease family protein 1 288 453 - -
Vifa2g02615 530 ProSiteProfiles Peptidase family A1 domain profile. 100 447 IPR033121 -
Vifa2g02615 530 Gene3D Acid Proteases 85 285 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02615 Vifa-Chr2 694649461 694652934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02615 100 469 Miscellaneous Gene Families AT1G77480 27.226 1.51e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02615 - - tpra:123903964 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02615 2 694649461 694652934 Vifa2g02615 2 694649461 694652934 ECH