Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02600 ATGGGAGACAATTCGCCAGAGCAAAAAGCAGGTTGTGGATCATTAATAACCAGCGTATTTCGACACAGTTTATGGCCAAGAAAAACATCCTCTGCGAGTTCTCTTCCCTTACCAAACAATGCCGCTTCAAATGATACAATACGACGTAAAAGTGCTTCTAAAGAGGTTGTTTACGTAGATGCACCTTCGCGCAATACATCGACTGCACGTTCTGTTACAAAGTCTTGTTCGCCAAATAATGATAATAATAATAATAATAATAATCCGCAGAGGAGAAACCAAAATGAAACTACAATACCACCTCGTCCTGTTCCTGTTCCATCGAAGGCTTCAATGGCTACTCAGGGATATGTTAATCAAGGAAGGAGGGTACAAAAGGAAGCTATTGGAATTTCGGGTGAGTTAGAAAGTATGATCAATGATCATCAAAAATCGAAGGGGAGTGGTAATCTCGTTCGCGCTTCTTCTGGCAATGTTATGTTGTATGGGAACTTAGGTAATATTAGGCAAGGATATAAGGATAATAGTTATTCAATTGCAATGGATAACTATAATCAGTATTTTGAGAATTCGAGTTCAAATGGTGGAGGACAGAAGAAGAATGTGGTGAGTATTAGTAATGAGATGAAACCAGCGATGAATTCGGGTGGTGGTTCGCTTTGTAGGGCTATATCGACTAGAATGGATCCAGAACAACTGAAGATGATGGGGAATGAGGATTATAAGAATGGGAGATTTGCGGAGGCATTGGCGTTGTATGAGGCAGCTATTTCAATTGATCCTAAAAAGGCTTCGTATAGGAGTAATAGAAGCGCGGCCTTAACGGGTCTTGGTAGGTTGCTTGAAGCTGTGTTTGAATGTAGGGAAGCTATTCAGATTGATCCTCATTATCATCGAGCCCATCATCGTTTAGGAAATTTGCATTTAAGATTAGGAGAGACGGATAAGGCTCTTTATCATTATAAACAATCGGGACCAGAGGCTGATCCTGATGAGGTTGCTAAAGTGAAGATTCTTCAAGCTCATCTAAATAAATGCACCGAGGCTCGCAGGTTAGGAGATTGGAACACACTCATTACCGAGGCTTCCAACACTATATCATCTGGTGCAGATTCTGCTCCACAGATATTTGCATTGCAAGCCGAAGCCTTTATCAAACTCCGTAGGCATCAAGATGCAGACAATGTAATGAAAAAGGGTCCTAATTTTGATGTTGACGATTGTACAAAGTTCTTTGGACCAATTGGTAATGCAAATTTGTTAGTCACGCGCGCTCAAGTTGATATGGCTGCTGGCAGATTTGATGATGCTTTAGAGGCAGCACAGAAAGCAGCAAGGCTAGATTCAAACAACAAGGCAGCAATGAAGGTATTGATAAAAGCTCGAGCCGTGACAGCTGCAAGAGGCAGAGGAAACGAGCTTTTCAAGGCATCGAAATTCTCTGAGGCTTGTATTGCATATGGAGAAGGGCTTGAGAATGATCCTTGTAACTCTGTTTTACTATGCAATCGGGCAGCCTGTAGATCAAAACTCGGCCAATTAGAGAAAGCGGTGGAAGATTGCTCTGCGGCGCTTAGCTTGCGCCCATCTTACACCAAAGCAAGGATGAGAAGAGCTGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATAGTAGACTATGAGATCTTGTTAAGAGAGACACCAGGAGACGAGGAAGTAAATCGAGCATTGTTGGAGGCTCGTGTACAACTTAAGAAACAACGAGGTGGATGA 1758 0.4209 MGDNSPEQKAGCGSLITSVFRHSLWPRKTSSASSLPLPNNAASNDTIRRKSASKEVVYVDAPSRNTSTARSVTKSCSPNNDNNNNNNNPQRRNQNETTIPPRPVPVPSKASMATQGYVNQGRRVQKEAIGISGELESMINDHQKSKGSGNLVRASSGNVMLYGNLGNIRQGYKDNSYSIAMDNYNQYFENSSSNGGGQKKNVVSISNEMKPAMNSGGGSLCRAISTRMDPEQLKMMGNEDYKNGRFAEALALYEAAISIDPKKASYRSNRSAALTGLGRLLEAVFECREAIQIDPHYHRAHHRLGNLHLRLGETDKALYHYKQSGPEADPDEVAKVKILQAHLNKCTEARRLGDWNTLITEASNTISSGADSAPQIFALQAEAFIKLRRHQDADNVMKKGPNFDVDDCTKFFGPIGNANLLVTRAQVDMAAGRFDDALEAAQKAARLDSNNKAAMKVLIKARAVTAARGRGNELFKASKFSEACIAYGEGLENDPCNSVLLCNRAACRSKLGQLEKAVEDCSAALSLRPSYTKARMRRADCNAKLERWEASIVDYEILLRETPGDEEVNRALLEARVQLKKQRGG 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02600 585 SUPERFAMILY TPR-like 466 581 IPR011990 GO:0005515
Vifa2g02600 585 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Vifa2g02600 585 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 584 IPR044534 -
Vifa2g02600 585 MobiDBLite consensus disorder prediction 28 112 - -
Vifa2g02600 585 SMART tpr_5 298 331 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 230 263 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 498 531 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 532 565 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 264 297 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 418 451 IPR019734 GO:0005515
Vifa2g02600 585 SMART tpr_5 464 497 IPR019734 GO:0005515
Vifa2g02600 585 Gene3D Tetratricopeptide repeat domain 228 584 IPR011990 GO:0005515
Vifa2g02600 585 MobiDBLite consensus disorder prediction 60 99 - -
Vifa2g02600 585 SUPERFAMILY TPR-like 230 453 IPR011990 GO:0005515
Vifa2g02600 585 Pfam Tetratricopeptide repeat 300 324 IPR019734 GO:0005515
Vifa2g02600 585 Pfam TPR repeat 237 274 - -
Vifa2g02600 585 ProSiteProfiles TPR repeat profile. 418 451 IPR019734 GO:0005515
Vifa2g02600 585 Pfam Tetratricopeptide repeat 500 531 IPR001440 GO:0005515
Vifa2g02600 585 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02600 Vifa-Chr2 689607924 689610299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02600 242 534 Glycosyltransferase AT3G04240 21.502 3.76e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02600 - - gmx:100811282 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02600 2 689607924 689610299 Vifa2g02600 2 689607924 689610299 ECH