LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02593	ATGGCAAGCAAAAGTGTTGACGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACCACAGACTTGTCTGGACTGGTAACTGGACTTGTAAAGCCATCCGTAGATATTTTGTGGTTCACATGGAGAATGAAGATGTTAACTGGTCAAAGGGGAGTTGCCATACTCTATGTTTACATGTTACTTGGCCTTGGATTTTTAAGAACCGTTACTCCAGATTTTGGTGATTTGATAAGCCAAGAGCAACAACTTGAAGGACTCTTTAGGTTCATGCATGAGAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGCGGTGCTAGAGAAAAATCTATGGTTGAATCAAGATTCAAGGACCTTCTGGCACACTCCCAGTACCTTCTGAAAAAGAAATGGCTGTTTGGTATACTAGATGATTTCATTACCAAGCAACTACCTCATAATGTGACCTGGTTGCTGAGCTTGTTCTACGCTATGGAACACAAAGGAGACCGTGCATTGATAAGTACTCAGGGCGAGCTGGCACATGCATTGAGGAAGCTTGTAGAACTTTCTGGGGGTATTAATAGGATTTTGAGCTTGAAGAGCTTCTGGATGCAGCACTTTCTGGGGAATCCATTAATGGCGATGTTGGCCAGGGAGTTGACATGTGATGTTGAGCTTGGGGGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGGAAAAGTTCCATTTTCAGAGTTCTTCGAGGACTTTGGCCAATTGCAAGTGGAAGACTCTCTAGACCACTGGAAGGGGACCAGATTATATACCCTCTATCCCGCGATGAAGCAGAGTTTAGAGCATTGAAGATGTATGGAAAAGGTGAAAAACATCCTGATACTGTAAAGTTGTTGGACAAGCACTTGGAAGTTATCCTAGAGGATGTTCGGTTGAATTATCTTTTAGAAAGGGACACAAATGGCTGGGATGCAAATTTAAATTGGGAAGATACTCTCTCTCTTGGAGAACAACAGAGATTAGGCATGGCACGGTTGTTCTTCCATAAGCCCAAGTTTGGCATCTTGGACGAGTGTACCAATGCAACAAGTGTTGACGTTGAAGAACACCTATATGGGCTAGCGAAGAAAATGGATATCACAGTTATTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCAATGGAATTGCGGCTGATTGATGGTGAGGGTAATTGGCAACTTCGTTTGATCAAGCAATGA	1233	0.4282	MASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKMLTGQRGVAILYVYMLLGLGFLRTVTPDFGDLISQEQQLEGLFRFMHERLCTHAESVAFFGGGAREKSMVESRFKDLLAHSQYLLKKKWLFGILDDFITKQLPHNVTWLLSLFYAMEHKGDRALISTQGELAHALRKLVELSGGINRILSLKSFWMQHFLGNPLMAMLARELTCDVELGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPLEGDQIIYPLSRDEAEFRALKMYGKGEKHPDTVKLLDKHLEVILEDVRLNYLLERDTNGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMDITVITSSQRPALIPFHSMELRLIDGEGNWQLRLIKQ	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02593	410	ProSitePatterns	ABC transporters family signature.	328	342	IPR017871	GO:0005524\|GO:0016887
	Vifa2g02593	410	Gene3D	-	211	404	IPR027417	-
	Vifa2g02593	410	PANTHER	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	208	405	-	-
	Vifa2g02593	410	Pfam	ABC transporter	216	356	IPR003439	GO:0005524
	Vifa2g02593	410	Pfam	ABC transporter transmembrane region 2	6	157	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vifa2g02593	410	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	214	400	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02593	Vifa-Chr2	685119524	685123229	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02593	1	410	Acyl Lipid Metabolism Gene Families	AT4G39850	62.083	0.0	591

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g02593	K25819		-	gmx:100813765	686.411