Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02577 ATGAAAAAGAAACAATCTTTGCGAAACAAAGCCACCCACTTTGTATCTCTCCTTCTCAACCCTATCTCTGATCCTGATTCTCAACAACAACCCTCAAAACACCCTCCTCCATCTTCTTCTGAAGAAATAGGTGAGTTTAAGATAAGTGATGAAGAGGGTAGTACTAATAATCATGATTTAGTTGATGGACCTGATACTTCATCCTTCACTGCATTTCTCTACTCTTTTTTGTCTTCCTCAAGCTCTAAAGAGGATGCTAACTCCAATGGACAGAAGAATGATGATAAAAGTAAGAATAGCGCTTTACCTGATTCATCTATGAAGGATAATGGTGGGAGGAAAAGTTTGTTTTCTAGAAGTAAGCAATCAGTTGGTAGTGTTATTCGCCGAGCTGTCAGAATCGGTGGAATTCGCCATCACGGTCGAATGGATAATGATCTTGAAGTGAAACATCAAGATAGGAGGAAAGAATCACTGCCTGTGAAAGAATCATTGTCTGTGTCTTTGAACGATTTGCCGTGTGTTTCTGAACCTTCGGTTCTTGTTTCCGAAAGTATAAGGAATGTTCTCTATGCTTCTCTTCCACCTCTTATGCATGGAAGGAAATGGTTGTTGCTATACAGCACTTGGAGGAATGGTATATCACTTTCGACTCTTTATCGAAGAAGCGCGTTATGGCCTGGATTGAGTTTGCTGGTTGTTGGAGATAAAAAAGGAGCGGTATTTGGAAGCTTGGTTGAAACACCTCTCAGACCATCCAACAAGAGAAAATACCAGGGAACAAATAGTACTTTTGTTTTCACAAATATCTCCGGTCATCCTATCATATATCGTCCAACGGGGGTAAACCGTTATTTCACACTTTGCAACACTGACTACATAGCAATTGGTGGGGGAGGTCATTTTGCACTTTATCTGGACAGTGATCTATTGAACGGCTCAAGTTCAGTATCTGAAACTTTCGGGAATCCTTGCCTTGCATATTCTCAAGACTTTGAAATGAAGGAAATAGAGCTATGGGGCTTTGTACAGACTTCAAGATATGAGGAAGTGCTTGCATTAAGCAGAACTGAGGCACCAGGGATTTGTCGGTGGTAA 1098 0.408 MKKKQSLRNKATHFVSLLLNPISDPDSQQQPSKHPPPSSSEEIGEFKISDEEGSTNNHDLVDGPDTSSFTAFLYSFLSSSSSKEDANSNGQKNDDKSKNSALPDSSMKDNGGRKSLFSRSKQSVGSVIRRAVRIGGIRHHGRMDNDLEVKHQDRRKESLPVKESLSVSLNDLPCVSEPSVLVSESIRNVLYASLPPLMHGRKWLLLYSTWRNGISLSTLYRRSALWPGLSLLVVGDKKGAVFGSLVETPLRPSNKRKYQGTNSTFVFTNISGHPIIYRPTGVNRYFTLCNTDYIAIGGGGHFALYLDSDLLNGSSSVSETFGNPCLAYSQDFEMKEIELWGFVQTSRYEEVLALSRTEAPGICRW 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02577 365 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 19 343 - -
Vifa2g02577 365 ProSiteProfiles TLDc domain profile. 180 343 IPR006571 -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 21 37 - -
Vifa2g02577 365 Pfam TLD 205 342 IPR006571 -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 103 123 - -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 80 123 - -
Vifa2g02577 365 SMART 109ultra 179 343 IPR006571 -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 1 64 - -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 44 58 - -
Vifa2g02577 365 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02577 Vifa-Chr2 683431658 683433857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02577 202 351 EF-hand Containing Proteins AT5G06260 30.000 2.99e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02577 - - gmx:100804124 454.521