Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02555 ATGGGGCGAGGCAAAGGAGGGAAGAGCCGTACTCAAAGAAAGCATTTCCAGCAAAACAGAGAGAATGTTTGGAACCAACACCGTCCAGAATCACTTCCTTCCACCACTAACCCTTACGATATTCAAAACCCTGATTTCGATCGCTATTACAAGGAGCAAAACATCGTGTCTCTAGAAGAATGGGATTCATTCATGCAAGTTCTCAGAACTCCATTGCCTGCAGCATTTAGAATCAATTCCAGTAGTCTTTTTCATGCTGATATTCGGTCCCAGCTGGAAAATGACTTTGCACGTGCTCTTCAGGCCATTGTTCTTGAAGGTGATGAGGAGGATGCTATTAGACCATTGCCATGGTATCCTGAAAATCTTGCTTGGCATTCTAATTTTTCCCGTATGCAGCTCAGGAAGAATCAATCACTTAAGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACTAGACAGGAAGCTGTCAGCATGGTGCCTCCTCTGTTCTTAGATGTACATTCAAATCACATTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAAATTTTACACCGATCAACTAAAGCAGGATCGTTGCCTGATGGAATGGTTATAGCAAATGATCTAGATGTACAAAGATGTAATCTTCTCATCCACCAAATAAAACGAATGTGCACAGCAAACCTAGTTGTCACCAACCATGAAGCTCAGCACTTCCCAGGATGTCATTTGAACTTGGATTGTGATATAATGGATGCAAGTCAGCAGACTTCCCAACTGCTATTTGATCGCGTTCTGTGTGACGTACCCTGCAGTGGAGATGGTACCCTCCGCAAAGCACCTGATCTCTGGAGGAGATGGAACACAGGGACAGGAAATGGACTTCACACCCTACAAATTTTAGTTGCCATGCGAGGCCTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACCTGCTCTATGAATCCTATTGAAAATGAAGCTGTCATTGCAGAGGTTTTGCGGAGGTGCAAAGGATCTATTGAACTTGTTGATGTCTCCGGTGAGCTTCCCCAACTTATACGTCGCCCGGGTCTGAAGAGATGGAAGGTGCCCGACAAGGGCAAGTCCTTGGTTTCCTGCAAAGAGGTTGCCAAGGTTCGTAGAAGTGCAGTTCTGCCCAGCATGTTTCCAAATGGAGGAAGCTATCGAGATATTGACTGTAACAGTAATGGTGATGTTAACGGACATCCTGAAGATGGTGTTCAAGCAGAGGAGAATCCTGCGATGCATAAGTTTACTGAGATAGTTTCTGATTTCCCACTAGAGCTATGCATGCGTTTACTGCCCCATGATCAGAACTCTGGAGCCTTCTTTATAGCTGTATTGCAAAAAGTTTCTCCTCTGCCAGCAATTGAAGTAAAACGTAGAAAAGAAGTTAATAATCAACATATAGAATCAGTTAACCAAGGCAGCGAGGATGCACAAGTATTGCAAATTTATCCATCAGAAAGTACACACAAAGAAGCTTGCGAACAAGTTTCCGAGGATAATAAAAATGAACCAAATGAACCCAACACTGCAGATTTTAAATTTAGTCCTGCTATAGGTGAAGACGGGGATACCGAGGAAGCCCAGGAGCCCCACAATGATGAAAACATAGGAAAGATCACTCCAAGCAAAAGAAAGCTTCAGATACAAGGCAAATGGAGAGGTGTTGACCCTGTCGTATTCTTCAAAGATGAATCAATTATAAAAAGCATAGAGTCATTTTATGGCATTGACGAGCAGTTCCCATTAGATGGCCACCTTGTAACAAGAAACAGCGATACAAGTAATGTAAAAAGAATTTACTACATCTCCAAGTCAGTCAAGAATGTTCTTGAGTTGAACTTATCAGTTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTAAAAATATTTGAAAGACAAAAGTCACGAGAAGGTAGATCTGTAGAATGTGCTTTCAGAATTGCTTCTGAAGGACTGCCCATTATCCTCCCTCATATCACCAAACAGATTCTAACTGCATCTGCTATAGATTTCAAACATCTTCTCCAGTATAAAAATGTAAAATTTGCAGAATTTGTTGATGCCAAATTTGGTGAAAAGGTGGCAAACCTAAAGCCAGGCTGTTGCGTGATCGTTCTGGGTGAAGGAAACAAAGTCTCTGCAGAGGCCCTCCAACTGGATGAATCATCAATAGCCATTGGATGCTGGAAGGGTCGGGCAAGTTTAACCGTGATGGTTACTTCAATAGAATGTGAAGAACTGCTTGAAAGGCTTTTAATGCGCTTAGACAGGGTAACAGAAAAGGGGTCCTCCATGCATGAGGAAAAACGATCTAATGATGTGAGAGATGTAGAACAGGAATCAAACGGTAACAGCCAAGATGTGGAAGCTATTTGA 2433 0.4192 MGRGKGGKSRTQRKHFQQNRENVWNQHRPESLPSTTNPYDIQNPDFDRYYKEQNIVSLEEWDSFMQVLRTPLPAAFRINSSSLFHADIRSQLENDFARALQAIVLEGDEEDAIRPLPWYPENLAWHSNFSRMQLRKNQSLKRFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSNHIVLDMCAAPGSKTFQLLEILHRSTKAGSLPDGMVIANDLDVQRCNLLIHQIKRMCTANLVVTNHEAQHFPGCHLNLDCDIMDASQQTSQLLFDRVLCDVPCSGDGTLRKAPDLWRRWNTGTGNGLHTLQILVAMRGLSLLKVGGRMVYSTCSMNPIENEAVIAEVLRRCKGSIELVDVSGELPQLIRRPGLKRWKVPDKGKSLVSCKEVAKVRRSAVLPSMFPNGGSYRDIDCNSNGDVNGHPEDGVQAEENPAMHKFTEIVSDFPLELCMRLLPHDQNSGAFFIAVLQKVSPLPAIEVKRRKEVNNQHIESVNQGSEDAQVLQIYPSESTHKEACEQVSEDNKNEPNEPNTADFKFSPAIGEDGDTEEAQEPHNDENIGKITPSKRKLQIQGKWRGVDPVVFFKDESIIKSIESFYGIDEQFPLDGHLVTRNSDTSNVKRIYYISKSVKNVLELNLSVGQQLKITSVGLKIFERQKSREGRSVECAFRIASEGLPIILPHITKQILTASAIDFKHLLQYKNVKFAEFVDAKFGEKVANLKPGCCVIVLGEGNKVSAEALQLDESSIAIGCWKGRASLTVMVTSIECEELLERLLMRLDRVTEKGSSMHEEKRSNDVRDVEQESNGNSQDVEAI 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02555 810 Gene3D Vaccinia Virus protein VP39 40 466 IPR029063 -
Vifa2g02555 810 ProSitePatterns NOL1/NOP2/sun family signature. 268 279 IPR018314 GO:0003723|GO:0008168
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase signature 449 466 IPR023267 GO:0001510
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase signature 179 189 IPR023267 GO:0001510
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase signature 269 281 IPR023267 GO:0001510
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase signature 319 335 IPR023267 GO:0001510
Vifa2g02555 810 MobiDBLite consensus disorder prediction 513 557 - -
Vifa2g02555 810 Pfam 16S rRNA methyltransferase RsmB/F 169 346 IPR001678 GO:0008168
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 353 372 IPR023270 GO:0016428
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 125 146 IPR023270 GO:0016428
Vifa2g02555 810 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 639 651 IPR023270 GO:0016428
Vifa2g02555 810 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 64 467 IPR001678 GO:0008168
Vifa2g02555 810 MobiDBLite consensus disorder prediction 22 39 - -
Vifa2g02555 810 MobiDBLite consensus disorder prediction 1 39 - -
Vifa2g02555 810 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 41 383 - -
Vifa2g02555 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 467 IPR029063 -
Vifa2g02555 810 MobiDBLite consensus disorder prediction 781 801 - -
Vifa2g02555 810 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 784 IPR023267 GO:0001510
Vifa2g02555 810 MobiDBLite consensus disorder prediction 781 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02555 Vifa-Chr2 678508888 678516477 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02555 K15334 - gmx:100808598 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02555 2 678508888 678516477 Vifa2g02555 2 678508888 678516477 ECH
Vifa2g02555 2 678508888 678516477 Vifa2g02555 2 678508888 678516477 PCT