Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02553 ATGACATCTTCAGTAATTGAAAGTGGACACGATGAGGCTAAACACGAACCGTCCGATTTGATCGCAGAGAAAATGAATCCTACGGTCGTAAACCTTTGGCTTCCTAATGAAACGTTCTTGAAAGCTGCAGTTTCTCTCAAAGATGAGGTGGTGGAGGTGAATTGGAATCGGCGAGAAGTGGTTGATCCTACGATGTATACGGGGTTGCTTGGTACGGCTTTCACTTGCCTCAGGTCGTTTGAGGTTACCGGTTGCCGTGAAGATTTGTTGTTATGCTCGGAGATTATTGACACGTGTGTCACTGTCGCACGTGCCTCCCTAAGACACGTGACATTTTTATGTGGTAGAGGAGGAGTATACGCTCTTGGAGCTGTCGTTGCTAATTACATGGGGGACCTTCCAAAACGTGACCTGTTTTTGGGTCTATTCATTGAGGTGGCAAAAGAAAGGGCTCTGCCTATTGGACCAGAGGAAGGTGGATTTGGAATGTCATATGATCTTCTATACGGACGAGCTGGATTCTTATGGGCCGCATTATTCCTAAACAAACACCTAGGAGAAGACGTAGTGCCCAAGGACATTCTAACGTCTATTATTGATGCAGTATTGGCTGGCGGTAGAGCTGGAGCGTCTGATATTAAAGACTGTCCATTAATGTATAGATGGCATGGGACTAGATACTTAGGTGCAGCAAATGGTCTTGCTGGTATTCTTCATGTGCTCCTTCACTTTCCACTCCCAAGTGAAGATGCTGAGGATGTAAAGGGAACTTTAAGATATTTGATAAATAAACGTTTTCCCCATAGTGGAAATTATCCATCAAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTGGGATGGCCATTACACTGTCTAAAGCAGCACAGGTTTTTCCAAATGACAGAGATCTTCGAGATGCAGCAATAGAAGCAGGAGAAGTTGTGTGGAAAAGTGGATTAGTGAAGAAAGTAGGACTAGCTGATGGCGTATCTGGAAATGCCTACGCCTTTCTTTCTCTTTACAAACTAACTAAAGATAGTATATATGAAGAGAGGGCAAAATCATTCTCTTGTTTTTTGTATGAAAATGCTAGAGCTTTGGCAGCTGAGGGGCAAGCTCTTACTGCTGGCAATGACTACTCGCTCTTCCATGGACTTGCTGGGATAGCATGTCTTTGGTTTGATTTGATTGCACCTGATAACTCTAGGTTTCCGGGATATGAGTTATAG 1248 0.4391 MTSSVIESGHDEAKHEPSDLIAEKMNPTVVNLWLPNETFLKAAVSLKDEVVEVNWNRREVVDPTMYTGLLGTAFTCLRSFEVTGCREDLLLCSEIIDTCVTVARASLRHVTFLCGRGGVYALGAVVANYMGDLPKRDLFLGLFIEVAKERALPIGPEEGGFGMSYDLLYGRAGFLWAALFLNKHLGEDVVPKDILTSIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLINKRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRDLRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYKLTKDSIYEERAKSFSCFLYENARALAAEGQALTAGNDYSLFHGLAGIACLWFDLIAPDNSRFPGYEL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 GO:0031179
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 330 343 IPR007822 GO:0031179
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 385 402 IPR007822 GO:0031179
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 GO:0031179
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 62 80 IPR007822 GO:0031179
Vifa2g02553 415 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 GO:0031179
Vifa2g02553 415 Gene3D - 18 415 IPR012341 GO:0005975
Vifa2g02553 415 SMART LANC_like_2 59 415 IPR007822 GO:0031179
Vifa2g02553 415 SUPERFAMILY LanC-like 44 415 - -
Vifa2g02553 415 PANTHER LANC-LIKE PROTEIN 36 415 - -
Vifa2g02553 415 Pfam Lanthionine synthetase C-like protein 60 415 IPR007822 GO:0031179
Vifa2g02553 415 CDD euk_LANCL 65 411 - -
Vifa2g02553 415 PRINTS Eukaryotic LanC-like protein family signature 263 278 IPR020464 -
Vifa2g02553 415 PRINTS Eukaryotic LanC-like protein family signature 301 322 IPR020464 -
Vifa2g02553 415 PRINTS Eukaryotic LanC-like protein family signature 401 415 IPR020464 -
Vifa2g02553 415 PRINTS Eukaryotic LanC-like protein family signature 195 210 IPR020464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02553 Vifa-Chr2 677686377 677688873 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02553 - - gmx:100785406 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02553 2 677686377 677688873 Vifa2g02553 2 677686377 677688873 ECH