Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02519 ATGGGAGGGAGTACTTCAAAAGGGTCTTCTTCACCTAGAAGGAGGCATGTTCCTTCATATGAATCTTCAGCTCCATTTTATGACAATTCACAGCAAAAAAAGAAGTTAGATAAGAGGTATTCAAGGATTGATGATGATTATCATTCACTGGATGAGGTTAGTGCTGCTCTTGCAAATGCTGGGCTGGAATCTTCTAATCTTATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGTTCATTCAATCGGAAAAGCTTACATCACATTGGAACTGGCCAAAACCCTTATGAACAAGCAATATCTATTATTGGGAAAACTCTATCTACTTTTGATGAAGATAACTTGATTCCATGTTTTGGATTTGGAGACGCATCTACACATGATCAAGATGTATTTAGCTTTTATTCAGAAGAGAGGTTATGTAACGGGTTTGAAGAAGTTTTGGCACGATACAGAGAAGTTGTTCCTCACCTCAAACTTGCAGGACCGACTTCTTTCGCCCCTATTATTGAGATGGCCATAACTATTGTTGAACAAAGTGCTGGCCAATATCATGTCCTGCTTATAATTGCAGATGGACAGGTGACCAGAAGCATCGATACAGAATATGGCCACCTAAGTCAACAGGAACAGAAGACAATAAACGCAATCGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTAGGCGTTGGAGATGGACCATGGGAGATGATGGAGGAATTTGACGATAACATTCCTTCTAGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTAAGATAATGGCGAAAAGTGTAAATCCATCCCGAAGAGAGGCAGAGTTTTCTCTTGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCTTACTTGGTTCACGGAGGGGACATTCACCGGATAGGGTTCCTCTACCCGCTCCTCTTTATAATAGGACTTCCTCCAACATCAGTGGAAAATCTTTTCGGTCAAACAGTTTTCAGCCGAATGTGCATAGAGGTACAGGCTATGAATATGATAGCGGTGTTCACAATCGCACAGAACCATCTACAAGCTCTTTACATGATAATAAGGTTTGCCCGATTTGTCTTACAGATCCAAAGGATATGGCCTTCGGTTGTGGACATCAGACTTGTTGTGGATGTGGAGAAGACCTCGAATTCTGTCCAATTTGCAGGAGCACAATCACTACTAAGATAAAGCTTTACTAG 1242 0.409 MGGSTSKGSSSPRRRHVPSYESSAPFYDNSQQKKKLDKRYSRIDDDYHSLDEVSAALANAGLESSNLIVGIDFTKSNEWTGKSSFNRKSLHHIGTGQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEERLCNGFEEVLARYREVVPHLKLAGPTSFAPIIEMAITIVEQSAGQYHVLLIIADGQVTRSIDTEYGHLSQQEQKTINAIVKASEYPLSIVLVGVGDGPWEMMEEFDDNIPSRAFDNFQFVNFTKIMAKSVNPSRREAEFSLAALMEIPSQYKATIELGLLGSRRGHSPDRVPLPAPLYNRTSSNISGKSFRSNSFQPNVHRGTGYEYDSGVHNRTEPSTSSLHDNKVCPICLTDPKDMAFGCGHQTCCGCGEDLEFCPICRSTITTKIKLY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02519 413 PANTHER COPINE FAMILY PROTEIN 1 19 390 - -
Vifa2g02519 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 413 IPR013083 -
Vifa2g02519 413 SMART VWA_4 64 264 IPR002035 -
Vifa2g02519 413 Pfam Zinc finger, C3HC4 type (RING finger) 367 407 - -
Vifa2g02519 413 SUPERFAMILY RING/U-box 363 409 - -
Vifa2g02519 413 SUPERFAMILY vWA-like 65 248 IPR036465 -
Vifa2g02519 413 ProSiteProfiles Zinc finger RING-type profile. 370 403 IPR001841 -
Vifa2g02519 413 Pfam Copine 89 302 IPR010734 -
Vifa2g02519 413 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g02519 413 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02519 Vifa-Chr2 665046211 665049585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02519 K16280 - gmx:100820356 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02519 2 665046211 665049585 Vifa2g02519 2 665046211 665049585 ECH
Vifa2g02519 2 665046211 665049585 Vifa2g02519 2 665046211 665049585 PCT