Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02488 ATGACGGAAAACGAACGAAAGCGTGACAAAATGGAAAAACTGAAGAAAGGTAAAAGCATGATCGTCTTCACCGGAACTGCTGCAGTGCTCGCAATCGCCGTGAACCTCGTTATCACCGCCGTCAAACACCACAAAGACAAAAATGCAAAGAAGAAAGATCTTGAAGGTTCTAAGGTGAAGGTTAATCTATCTGCATCTGAGATTGTTAAATTAGCAAACCAAATCATTGCTAAGTCAAATGAGGTTCACAATTCCGTTGCATCAGTGCCTCTCGATAAGGTTACATATGCAAATGTTATATCGCCTCTTGCTGAACTTCAAGCGCAGCAGTTTCCGTTGATTCAATCTTGTTTGTTACCTAAGTTGGTATCTACTCAAGAGAATGTGCGCAAAGCAAGTGCAGAAGCAGAGCAAAGAATAGATGCGCATCTTGACACATGCAGCAAACGTGAAGACATATATCTTGTCGTTAAAGCATTTGCAGTGAGGGGGGACTGGGTGAATGCTGAAACCAAAAGCTTTGTTCAAATTCTGGTGAGAGATTTTGAGCGAAATGGATTGAACCTCAGTGCAAGCAAAAGAGAAGAGTTGATGCGTCTAAAAGCTCAGATTGATGAATTAAGCGCAATATATATCCAAAATCTCAATGATGCTAGCGCATTTCTTCCTTTCAATGAGGCGGAGTTAGCTGGATTACCTCTAGAATTTCTCAAGGGTTTAGAGAAATCTGAAAATGGACAGTTGAAGATCTCCCTAAGAAGCCATCACGTCACAGCTGTACTCGAATTTTGCAAGGTAGGAACTACAAGAAGGATGGTATCACGGGCGTATGGAAATCGATGTGGAGAAGCCAATCTTTCTATTTTAGAAAGTCTGGTGCAACAGCGTCATAAATATGCTCGTTTACTTGGCTATTCGTGCTATGCCGAGTATGCTGTTGATGTTAGAATGGCAAAAACACCAACTAAGGTGTTTGAGTTTCTGAATGACATATCTATACGTATAACTGACTTGGCTATGAAAGAACTTGATATCTTGAAAGATATGAAGAAAAAAGAGGAAGGGGAGCTTCCATTTGGAATCGAAGACCTATTGTATTATGTAAAACGGGTTGAAGAGCAGAATTACGATTTGGACTTTGGCGAGATCAAGCAATACTTACCAATTAGTTTAGTTCTATCAGGAATCTTCAAAATTGTCCAAGATCTTTTTGGTTTAAGGTTTGAAGAAATCGTGGGAGCTGAAGTTTGGGATTGCGATGTTCGTGTATTTTCAGTATTTGACTTAAGTTCAAATGAACTCTTGGGTTATTGCTACCTTGATTTGTTCTCAAGGGAAGGAAAATATGGTCACAGTTGTGTGGTGCCTCTCCAGAACAGTGCATTAACAATCAGTGGGTCACGACAGATTCCGGTTGCATTACTAATATCTCAGTATCAAAAGGATTCTGACTGTAGTCCTGGATTATTGCGGTTTTCTGAAGTGGTCAATCTTTTCAAAGAGTTCGGTCACGTGGTTCAACAGATTTGCAACCGTGCTTCATTTGCTAGAGTTTCTGGAATACGCGTTGATCCTGACTTCGTAGAAATACCTGCTCAACTCTTACAAAACTGCTGTTATGAAAGCTTTTTTCTGAAGTTGATATCTGGATTTCACCAGGATATCACAAAGCCCTTAAAGGATGACCTATGCAAATCAATTAAAAGATGGAGAAATTCTTCTTCTGCGCTTAAATTGAAGCAAGAGATTCTATACTGTCTTTTTGACCAAATCATACATTCTGCGGATAACATAGATATTCGTGAGTTATTCAAGCATCTTCATTCCAAGGTGATGTTAGGATTGCCGGTATTAGAAGGAACCAATCCCGCCTCATGTTTTCCTTTTAGCGTCGTTGGTTATGAGGCAGCATGCTACAGTCGCATATGGAGTGAGGTTTTTGCTGCTGATATATTCGCTTCAATATTTTGCAACGGTGTTTCAAACCAGCTTCCCGGCATGCAATTTAGGAACAAGGTATTGGCCCCAGGCGGAGCGAAGGATTCTGTTGAAGTCATATCAGATTTTTTAGGAAGAAAACCCTCGATTCAAGCTTACTTTGAAAATAAGACCAAATATAGTACTCTGTAA 2130 0.4005 MTENERKRDKMEKLKKGKSMIVFTGTAAVLAIAVNLVITAVKHHKDKNAKKKDLEGSKVKVNLSASEIVKLANQIIAKSNEVHNSVASVPLDKVTYANVISPLAELQAQQFPLIQSCLLPKLVSTQENVRKASAEAEQRIDAHLDTCSKREDIYLVVKAFAVRGDWVNAETKSFVQILVRDFERNGLNLSASKREELMRLKAQIDELSAIYIQNLNDASAFLPFNEAELAGLPLEFLKGLEKSENGQLKISLRSHHVTAVLEFCKVGTTRRMVSRAYGNRCGEANLSILESLVQQRHKYARLLGYSCYAEYAVDVRMAKTPTKVFEFLNDISIRITDLAMKELDILKDMKKKEEGELPFGIEDLLYYVKRVEEQNYDLDFGEIKQYLPISLVLSGIFKIVQDLFGLRFEEIVGAEVWDCDVRVFSVFDLSSNELLGYCYLDLFSREGKYGHSCVVPLQNSALTISGSRQIPVALLISQYQKDSDCSPGLLRFSEVVNLFKEFGHVVQQICNRASFARVSGIRVDPDFVEIPAQLLQNCCYESFFLKLISGFHQDITKPLKDDLCKSIKRWRNSSSALKLKQEILYCLFDQIIHSADNIDIRELFKHLHSKVMLGLPVLEGTNPASCFPFSVVGYEAACYSRIWSEVFAADIFASIFCNGVSNQLPGMQFRNKVLAPGGAKDSVEVISDFLGRKPSIQAYFENKTKYSTL 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02488 709 Gene3D Collagenase (Catalytic Domain) 388 538 IPR024079 GO:0008237
Vifa2g02488 709 Gene3D Neurolysin, domain 3 194 700 IPR024077 -
Vifa2g02488 709 Coils Coil 190 210 - -
Vifa2g02488 709 Pfam Peptidase family M3 264 701 IPR001567 GO:0004222|GO:0006508
Vifa2g02488 709 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 61 701 - -
Vifa2g02488 709 Gene3D Endopeptidase. Chain P; domain 1 37 184 IPR024080 -
Vifa2g02488 709 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 37 704 IPR045090 GO:0004222|GO:0006508
Vifa2g02488 709 CDD M3A_TOP 70 701 - -
Vifa2g02488 709 FunFam Thimet oligopeptidase 1 41 184 - -
Vifa2g02488 709 FunFam Probable thimet oligopeptidase 388 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02488 Vifa-Chr2 652974242 652987334 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02488 K01392 - gmx:100793518 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02488 2 652974242 652987334 Vifa2g02488 2 652974242 652987334 ECH