Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02461 ATGCCTGGCTTTATTGTTGGGAAAAAGAGATTTATTAAGTCAAATATGTGTTTCACCGATTTGGTCAATCATAAATCAACTCACACACGAAGCAAAAGCAATCATAGTTTAACCGGTGAGACTATGGAGAAAGATTATAGCTCGATTCTACCTGGGCTGCCTGATGATGTTGCAAAACATTGTCTTGCACTTGTTCCTCGTTCCAACTTCCCGGCCATGGGTGGTGTCTGTAAGAAATGGAGGTTGTTTATTCGAAGCAAAGAATTTGTAATGGTGCGAAAATTGGCAGGATTGCTTGAGGAATGGCTCTATTTCTTGACTATGGACAGTGAAGGAAAGGAAACCCATTGGGAGGTCATCGATAATCTCAATCATAAATGTGTATCCCTTCCACCGATGCCTAGTCCAGGAAAGGCTTCGTTTGGGGTTGTGGTTCTTAATGGAAAACTTCTTGTCATGGCTGGTTATTCAGCTGTTGAAGGAACTGCCGTTGCCTCATCAGAGGTTTACCAATATGACTCTTACCTTAACAGTTGGAGCAGATTATCAAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTGAACGGCTTGGTTTATATTGCTGGAGGTTATGGAGTGAACGGTGACAGTCTCTCCAGTGTTGAGATGTATGATCCAGATACTGATAAATGGATCCTGATAGAGAGTCTTCGTCGCCCAAGGTGGGGTTGCTTTGCTTGTGGATTAGAAGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACTATTGGAAACTCCAAGTCTGTCGATATATATAACCCCGAGAAGCACAGCTGGTGCGACATTAAGAATGGCTGTGTTATGGTCACTGCTCACGCAGTATTGGAAAAGAAGTTGTTCTGTATTGAGTGGAAGAACCAGCGGAAGCTGGCAATATTCAGTCCAGAAAACAACTCATGGACAATGGTACCCGTCCCATTGACAGGGAGCTCGAGTGTGGGCTTTCGATTCGGCGTACTAGACGGAAAGCTGTTACTATTTCCAGTTGAAAAAGAACCTACTAATCAAACACTGTTGTATGATCCAAATGCCGCCTTGGGATCAGAATGGCAAACTTCAGACATAAGGCCATCTGGTATGTGCTTGTGCAGTGTAACAATCAAGGCATGA 1161 0.4358 MPGFIVGKKRFIKSNMCFTDLVNHKSTHTRSKSNHSLTGETMEKDYSSILPGLPDDVAKHCLALVPRSNFPAMGGVCKKWRLFIRSKEFVMVRKLAGLLEEWLYFLTMDSEGKETHWEVIDNLNHKCVSLPPMPSPGKASFGVVVLNGKLLVMAGYSAVEGTAVASSEVYQYDSYLNSWSRLSNMNVARYDFACAEVNGLVYIAGGYGVNGDSLSSVEMYDPDTDKWILIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKSVDIYNPEKHSWCDIKNGCVMVTAHAVLEKKLFCIEWKNQRKLAIFSPENNSWTMVPVPLTGSSSVGFRFGVLDGKLLLFPVEKEPTNQTLLYDPNAALGSEWQTSDIRPSGMCLCSVTIKA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02461 386 Pfam F-box domain 52 89 IPR001810 GO:0005515
Vifa2g02461 386 SMART kelc_smart 149 199 IPR006652 GO:0005515
Vifa2g02461 386 SMART kelc_smart 200 247 IPR006652 GO:0005515
Vifa2g02461 386 SMART kelc_smart 248 296 IPR006652 GO:0005515
Vifa2g02461 386 CDD F-box_AtAFR-like 49 93 - -
Vifa2g02461 386 SUPERFAMILY F-box domain 48 121 IPR036047 GO:0005515
Vifa2g02461 386 SUPERFAMILY Kelch motif 100 360 IPR015915 GO:0005515
Vifa2g02461 386 Gene3D - 87 384 IPR015915 GO:0005515
Vifa2g02461 386 PANTHER OS02G0202900 PROTEIN 8 382 IPR045887 -
Vifa2g02461 386 Pfam Kelch motif 240 279 IPR006652 GO:0005515
Vifa2g02461 386 Pfam Kelch motif 188 233 IPR006652 GO:0005515
Vifa2g02461 386 Pfam Kelch motif 139 186 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02461 Vifa-Chr2 645010535 645011818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02461 53 231 Miscellaneous Gene Families AT4G33900 29.534 1.28e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02461 - - gmx:100802912 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02461 2 645010535 645011818 Vifa2g02461 2 645010535 645011818 ECH
Vifa2g02461 2 645010535 645011818 Vifa2g02461 2 645010535 645011818 PCT