Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02458 ATGTCGCTCACATCATTCTCCATCATCCTCCACCACCGCTTGGTGGCCACCGCCACCCCTCAACTCCTCCGGCGCTTTAGTTTCATCCCAATTTCCGCCAGACAACAAAACCGTAAGCCCCAAGCCCCAAGCAAGAATCTCCTAAAAGCAAAACACGCATTGAAAAATTTCTCATCTCTCGCTCCCAACCTCTCCCTCGAAGACAACCCTCCTCTCTCAGAATCCCAAGCCGTCGGCGTCGTCGCTTCCTCCCAGGCCAATTTCATGCGCGTAGTTGTCCAGTCAGTCCCCGATGAATCTTCCGGAGGGGTAGAACTGCTGTGCGTTGTGAGGGCGCTGCTGAAGAAGATAAAGCGTAGGGTTATGGTTGGGGATAAGGTTATAGTAGGTTCTGTTGATTGGGTGGATCGGAGGGGAATGATTGAAAACGTGTTTCAGCGAAATTCTGAAATGCTTGACCCTCCCGTGGCTAACGTGGACCATTTACTGGTTCTCTTCTCGCTTGATCAACCAAAGCTTGAAACATTTACGCTTACAAGGTTTTTGGTTGAAGCTGAGTCCACTGGGATTCCTCTCACTCTAGCTCTTAACAAGACTGAGCTTGTGGATAAAGAGACCTTGGATTCCTGGAAGGCTAGGTTTCATGACTGGGGATACCAGCCAGTCTTTTGCAGTGTTAAATCTGGACAAAACCTTGATCTTCTTGCATTCCAATTGAGAGATCAAACAACAGTGGTTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCTCTTAGAAGCAACCATCGTACTTGTGATACTGCAGATGGGGAGAATTGGTTTGAACCTGTTTTAGGTAGCAGGTGGTTAGAGGAACAGCGAGTTGCGGAGGTTTCAACAAGAAGTGGCAGGGGGAAGCATACTACTCGTCATGTCTCTCTGCTTCCATTAACTGGAGGGGGTTATCTTGCTGACACTCCCGGGTTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAATCTCTTGCTCAAACTTTTCCTGAAATCAGGAAAATGCTTGGTGGAAATGAGCCTGCAAAATGTTCGTTTAACAATTGCTTGCATCTTGGTGAACCTGGCTGTGTTGTGAAGGGGGATTGGGAAAGATATTCATTATATTTTCAACTTCTTGATGAGATTAGAATCAGAGAGGAGTTCCAGCTGAGAACATTTGGAACTAAAAGAGAAAGTGATGTAAGGTTAAAAATAGGAAATATGGGTTCTCAGCAAGCAGAACCTCGCCTGGAACTTAAGAAGCATAGAAGACAGTCTCGAAAAAAGACTAACCAATCAATTTTAGATGAACTGCATGATGATGATGACGAAGACGAAGACAATTTGCTTGACGAGGAGAACGATCCCTTTTTAAATGCTTTAAGGAATGAAAATCCTTAA 1422 0.4536 MSLTSFSIILHHRLVATATPQLLRRFSFIPISARQQNRKPQAPSKNLLKAKHALKNFSSLAPNLSLEDNPPLSESQAVGVVASSQANFMRVVVQSVPDESSGGVELLCVVRALLKKIKRRVMVGDKVIVGSVDWVDRRGMIENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLETFTLTRFLVEAESTGIPLTLALNKTELVDKETLDSWKARFHDWGYQPVFCSVKSGQNLDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNHRTCDTADGENWFEPVLGSRWLEEQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLGGNEPAKCSFNNCLHLGEPGCVVKGDWERYSLYFQLLDEIRIREEFQLRTFGTKRESDVRLKIGNMGSQQAEPRLELKKHRRQSRKKTNQSILDELHDDDDEDEDNLLDEENDPFLNALRNENP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02458 473 ProSiteProfiles EngC GTPase domain profile. 157 326 IPR010914 GO:0003924|GO:0005525
Vifa2g02458 473 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 77 393 IPR004881 GO:0003924|GO:0005525
Vifa2g02458 473 CDD YjeQ_EngC 157 387 IPR004881 GO:0003924|GO:0005525
Vifa2g02458 473 MobiDBLite consensus disorder prediction 444 460 - -
Vifa2g02458 473 Pfam RsgA GTPase 144 330 IPR010914 GO:0003924|GO:0005525
Vifa2g02458 473 NCBIfam ribosome small subunit-dependent GTPase A 121 265 IPR004881 GO:0003924|GO:0005525
Vifa2g02458 473 Gene3D - 145 330 IPR027417 -
Vifa2g02458 473 Gene3D Probable gtpase engc; domain 3 332 394 - -
Vifa2g02458 473 Gene3D - 72 144 IPR012340 -
Vifa2g02458 473 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 148 328 IPR030378 GO:0005525
Vifa2g02458 473 SUPERFAMILY Nucleic acid-binding proteins 77 147 IPR012340 -
Vifa2g02458 473 MobiDBLite consensus disorder prediction 410 473 - -
Vifa2g02458 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 48 452 IPR004881 GO:0003924|GO:0005525
Vifa2g02458 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 386 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02458 K06949 - gmx:100796145 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02458 2 643788693 643791675 Vifa2g02458 2 643788693 643791675 ECH