Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02446 ATGCGAACAAGAAGAGGCTTCTGTTATCCTCAAACGCTTCCACTTCCAAACATGTCTTCAAACACCCACAAACGACAGAAGAGAATGCCGGAAAACACCACCGGCGGTTCTGACTTCTTTGACTTTTTACCCGATGATATTGTCCTGTCTATCCTCGGTAAACTCAGCTCCACCGCAACCTCTCCCTCCGATTTCATCAGTGTTCTAATCACGTGCAAGAGACTAAACGCTTTAGGTCTTAACTCTCTTGTTTTGTCGAAAGCTTCCAACAAAACATTATCAGTGAAAGCTAAAAATTGGTGCGACTCAGCTCACCGCTTCCTCAAACGTTGTGCCGATGCTGGAAACATTGAAGCGTGTTACACTCTCGGAATGATTCGGTTTTACTGTTTGCAAAACAGAGGAAGCGGCGCTTCGATGATGGCAAAGGCAGCAATGAAATCTCACGCGCCGTCGCTTTACTCATTAGCTGTGATTCAGTTTAACGGAAGCGGTGGAACGAAAAACGACAAGGATTTACGCGCTGGTGTGGCTTTATGTGCACGCGCTGCATTCCTTGGTCATATCGATGGGTTACGTGAGCTTGGTCATTGTTTACAAGACGGTTACGGCGTTAAGCAGAATGTTATAGAGGGACGGCGGTTTCTGGTCCAAGCTAACGCCCGTGAGCTTGCTGCCGTTTTATCTAACGGCAACAGTAAACATCCGTTAATGAGGTGGAGTGTTAACCCGGTTCAAAATCAGCCACCTCAGATTCGTGTTGTTTCTGGTTCAGGTTGTCCTTTGCTGAGTGATTTTGGATGTAATGTTCCGGTTCAGGAAGCTCACGCTGCGAACCGGTTTTTGACGGAGTGGTTTGAAATGCGGGGCGGGTTTCCGGGTCAGGGAATGATGCTCTGTTCGAATACGGGTTGTGGCCGGCCAGAGACCAGGAAGCACGAGTTTCGAAGGTGTTCGGTTTGCGGTGTGGTGAATTATTGCTCACGCGCTTGTCAAGCGCTTGATTGGAAGTTTCGACACAAGGCGGAGTGTGCGCCGGTTGAGAGGTGGTTAGATGAGGCGGGGCAACCTGTTGCCGGTGAGGGTAACGGTGACGGAGATATCAACGTTGAAGAAGTTGATAGGTAG 1128 0.4894 MRTRRGFCYPQTLPLPNMSSNTHKRQKRMPENTTGGSDFFDFLPDDIVLSILGKLSSTATSPSDFISVLITCKRLNALGLNSLVLSKASNKTLSVKAKNWCDSAHRFLKRCADAGNIEACYTLGMIRFYCLQNRGSGASMMAKAAMKSHAPSLYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDGLRELGHCLQDGYGVKQNVIEGRRFLVQANARELAAVLSNGNSKHPLMRWSVNPVQNQPPQIRVVSGSGCPLLSDFGCNVPVQEAHAANRFLTEWFEMRGGFPGQGMMLCSNTGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLDEAGQPVAGEGNGDGDINVEEVDR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02446 375 Pfam MYND finger 305 344 IPR002893 -
Vifa2g02446 375 MobiDBLite consensus disorder prediction 355 375 - -
Vifa2g02446 375 SUPERFAMILY HCP-like 101 219 - -
Vifa2g02446 375 SUPERFAMILY F-box domain 27 84 IPR036047 GO:0005515
Vifa2g02446 375 Gene3D - 294 348 - -
Vifa2g02446 375 Gene3D Tetratricopeptide repeat domain 91 288 IPR011990 GO:0005515
Vifa2g02446 375 ProSiteProfiles Zinc finger MYND-type profile. 302 344 IPR002893 -
Vifa2g02446 375 PANTHER MYND DOMAIN-CONTAINING 1 364 IPR044508 -
Vifa2g02446 375 FunFam Predicted protein 292 349 - -
Vifa2g02446 375 CDD F-box_SF 43 78 - -
Vifa2g02446 375 SUPERFAMILY HIT/MYND zinc finger-like 300 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02446 Vifa-Chr2 640025313 640026604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02446 - - gmx:100798136 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02446 2 640025313 640026604 Vifa2g02446 2 640025313 640026604 ECH
Vifa2g02446 2 640025313 640026604 Vifa2g02446 2 640025313 640026604 PCT