Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02438 ATGTCTCAGGTTGATAACAGAAATTCCTCAGCTGCTAAGCGTGCCAGGACTGATGGTAGCCGCAGGGAAGATGACTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCGTTCAGAACAACCTGTAACATGCGTAACTGCACCCAGCCAAGGCCTGCTGATCATAATTTTAAATCTGCTGTGAAGCCTCTTCAAGCTCCACAGGCCTATTCAGCTCCACCTCCTTATATAGGCTCCAATGCTCCCCCTTCGATATATCTTGGTGTCCCACCATACGGGTCTTCTTTATTCAATGGATCACCTGTTCCTCCCTATGAGGTTCCATTTTCTGGAGGATCAGCGGCCTATCATTACAATTATGGAGGCCGCATTTCTGCTGGCAGTCCTTATAGACCACTGCATCTAGCAGGACCGGCCCCATATGCAAGTGGATCCATGGTGGGAAACGGTGGGATCTATGCCATGCCTCAGTTATTGGATCGCTATGGCCTTGGTGTCCCTATTGGACCTGGAACAATGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGAGGAGATGCAACTCGTGACAATGATTGGGCATGTCCAAAATGTGGCAACGTCAATTTCTCATTTAGAACTGTCTGCAACATGAGAAAGTGCAACACTCCCAAGCCTGGATCCCAGGCCTCAAAGTCCGACAAGAACTCTAAGCAAAAGATGCCCGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCATTCCGAACCAAGTGCAACAGACAGAATTGTGGGGCTGACAAGCCAGCTGAGTCGGATAAATCTCCCTCATCATCTCCAGAACAAAATGACCAGTGA 861 0.482 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNFKSAVKPLQAPQAYSAPPPYIGSNAPPSIYLGVPPYGSSLFNGSPVPPYEVPFSGGSAAYHYNYGGRISAGSPYRPLHLAGPAPYASGSMVGNGGIYAMPQLLDRYGLGVPIGPGTMGTRPGFFRDDKSQKKGGDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSSSPEQNDQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02438 286 SUPERFAMILY Ran binding protein zinc finger-like 187 226 IPR036443 -
Vifa2g02438 286 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 117 230 - -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 265 286 - -
Vifa2g02438 286 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 221 247 - -
Vifa2g02438 286 SUPERFAMILY Ran binding protein zinc finger-like 234 271 IPR036443 -
Vifa2g02438 286 SMART zf_4 242 268 IPR001876 -
Vifa2g02438 286 SMART zf_4 24 50 IPR001876 -
Vifa2g02438 286 SMART zf_4 196 222 IPR001876 -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 173 194 - -
Vifa2g02438 286 Gene3D - 14 54 - -
Vifa2g02438 286 Gene3D - 191 226 - -
Vifa2g02438 286 Gene3D - 229 272 - -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 11 25 - -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 180 194 - -
Vifa2g02438 286 Pfam Zn-finger in Ran binding protein and others 240 270 IPR001876 -
Vifa2g02438 286 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Vifa2g02438 286 Pfam Zn-finger in Ran binding protein and others 195 224 IPR001876 -
Vifa2g02438 286 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g02438 286 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02438 181 273 EF-hand Containing Proteins AT1G55040 32.258 9.68e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02438 - - tpra:123907979 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02438 2 635802401 635805245 Vifa2g02438 2 635802401 635805245 ECH