Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02422 ATGGAAGAAGAGAGTAGTTTGATGATGTTTCCAATGGAGAAGAGAGCGTTGGAATGTGTTGGTAAAGGTTTTGATCTAACAAGTGATTTTCGAATGAAATTTGCAAAAGGATTGGTAAATGGTGGAAGGTTAGTGGAGGTTGATGAAATGAACAAGAGAGATGTTATGGTTCCAGGTGGAGTTATCATTCAAGATGTTTCCGAGGATATTCGATTCGATAAAGGTGATCGTGTTCGGATCAAATCCGATGTTCTTCCATTCAATCAGATGTCTGAAATGGTTAATCAGAAATCAGCGATACCAGGAAAAATTCCTTCGGGCTATTTTAACGCGGTGTTTGATTTGAGTGGCGATTGGTTTCGTGATGCGCAAGAGATTAAATCTCTTGCTTTTGATGGTTACTTCATTTCTCTTTACTATTTGCACTTAACTGCTTCACACCTGAAACTGCAAGAGGAAGTTAAAAAGTCTGTTCCAGCACAATGGGATCCAGCTTCTTTGTCCAGGTTTATTGGGACATATGGAACTCACATAATAGTAGGCATGGGTGTTGGAGGACAAGATGTAATATGTGTCAAACAAAAACATTCTTCCAAGGTTCCTCCGGGTGATCTCAGAAGACATTTAGATGATTTAGGAGATTTTTTGTTTTCGGATTTAAGAAGCCCTTCTTTACTAGAGAGGAAGACAACAATAGAAGACAAGCAAAAAGTCCCAGAAGTTTTTAACCGTGTGATGCAATCGAGCACGACACAGTTCACAAGTATTTCAGAAACATCAAGCAAAGATGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATGTGTTTAAGCATAGTCACTCAAGTTGGCTCCAAACAATGGCTTCTAGTCCTGAAGCAATCCATTTCAAATTTGTTCCTATTTCATCACTTCTCACCGGAATTCCTGGAAGCGGCTATCTTAGTCATGCAATAAATTTGTATTTAAGATATAAGCCCTCTCCGGAAGACTTACAATATTTCTTGGAGTTTCAAATTCCCAGAGAATGGGCACCCATGTTTTCTGAGCTTCCTCTTAGGCATCAAAGGAAAAAACCTTATTCTCCTCCGCTACAATTTAGTTTCATGTCTCCAAAGCTTCATATCAACTCTACACAGGTTGTAAGTGAACAAAAACCTGTGGTTGGCCTGCGATTATACTTGGAGGGAAGGAAATGTGATAAACTTGCAATACATATACATCATCTTTCAAGCCTCCCAAATACAATGACCCTTTCTTCAACCACGACTACAACTATGTGGCGAGGATCTGATAACGATGAATCTAGTGACCAATTCGCGGAACCAATAAGATGCAAGAGATTCGCGCACGTGTGCACCTCAGTAGTTAAGTATGACCCTAACTGGTTGCAAGAACCAAATTCAACCGGTGTTTATATCGTGACCGGTGCTCAACTCATTAGCAAAGGAAATTGGTCCAAGAATATGCTTCATTTGCGCCTGCTCTTCACTCACATACCAAATTGCAGCATCAGGAAAACTGAATGGGCTACTGCACCAGAAGCTTCAAGAAAATCGTCTTTCTTCACAAATCTGAGCACAACATTTTCATTCACACAACAAAGTGTTACTGCTACACAGAAACAGGCTGCTCCAACTGCTCTTAACTCTGGTGTTTATCCGGACGGTCCGCCCGTTCCTGTTCGTTCTGTTAAAATGCTTAAATATGTGGAGACAGGTGAGGTTTTGCGCGGCCCACATGATGCTCCCGGGCATTGGTTGGTAATTGCTGCTAAGCTTGTGACAGAAGGAGGTAAAATTGGGTTACAGGTAAAGTTTGCATTGTTAGATTACTAG 1839 0.4084 MEEESSLMMFPMEKRALECVGKGFDLTSDFRMKFAKGLVNGGRLVEVDEMNKRDVMVPGGVIIQDVSEDIRFDKGDRVRIKSDVLPFNQMSEMVNQKSAIPGKIPSGYFNAVFDLSGDWFRDAQEIKSLAFDGYFISLYYLHLTASHLKLQEEVKKSVPAQWDPASLSRFIGTYGTHIIVGMGVGGQDVICVKQKHSSKVPPGDLRRHLDDLGDFLFSDLRSPSLLERKTTIEDKQKVPEVFNRVMQSSTTQFTSISETSSKDGLTIICSKRGGDVFKHSHSSWLQTMASSPEAIHFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPEDLQYFLEFQIPREWAPMFSELPLRHQRKKPYSPPLQFSFMSPKLHINSTQVVSEQKPVVGLRLYLEGRKCDKLAIHIHHLSSLPNTMTLSSTTTTTMWRGSDNDESSDQFAEPIRCKRFAHVCTSVVKYDPNWLQEPNSTGVYIVTGAQLISKGNWSKNMLHLRLLFTHIPNCSIRKTEWATAPEASRKSSFFTNLSTTFSFTQQSVTATQKQAAPTALNSGVYPDGPPVPVRSVKMLKYVETGEVLRGPHDAPGHWLVIAAKLVTEGGKIGLQVKFALLDY 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02422 612 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 12 612 IPR044663 GO:0006952|GO:0012501|GO:2000031
Vifa2g02422 612 SMART MACPF_8 126 324 IPR020864 -
Vifa2g02422 612 Pfam MAC/Perforin domain 109 322 IPR020864 -
Vifa2g02422 612 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 3 336 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02422 Vifa-Chr2 627063732 627066406 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02422 - - gmx:100781070 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02422 2 627063732 627066406 Vifa2g02422 2 627063732 627066406 ECH
Vifa2g02422 2 627063732 627066406 Vifa2g02422 2 627063732 627066406 PCT