Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02413 ATGTCCATTTGCTTAGATATTCCTCTAGTTATAGAATCATCCGGTTTCAAAATAAATGATGTCTATCGCGCACGGTTTTCTTCTGTTACTGAGAAAGATGTTCTGAATGCTCTAGCCAACCTTGTCAGACCGAACAGGGACGAAGCAATGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACGCGATTTCAAACAAGTTTTTTCCAGGGGAAATATGGGAACCTAGATGCCAGAGTTATCTCCTATGGACCCTGTCAAACTCCAACTTTAGGATTTTGTGTGCAGCGGTATTTGCAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAGCGGCTATGAAATTCTGCTAGAATGGCAACGCAGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTGCTGAAGATGGGATTCTGGAAGTGACTGATATATCAGAAAAACAGGAAACCAAAGGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGTCCTCAGACAGCTATGCAACTAGCTGAACGATTGTATACTCAAGGCTTCATCAGTTATCCACGAACAGAAAGCACTGCATACCCTCCGTCATTTGACTTCCGTGGTGCACTCTCTGCACAAAGAAATAATCCAACTTGGGGTAACTATGTAGAAGGGCTACTCACCAGTGGTTATCAGAAACCTCGATCGGGAACAGATGTGGGTGACCATCCTCCCATTACTCCAATGAGATCTGCATCAGAGGATATGCTAGGTAATGATGCTTGGAAGCTGTACCAATATATCTGTCAATACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATGTAAGGAAAAAGGTTGAGTTTTCAGTTGGTGGAGAGTCCTTTCATTGTACAGGCCAGCATGTTATAACCAAAGGATTTACAGCTATTATGCCTTGGTTGGCAATAAATGATAAAAGTATTCCATCATTTACTAAAGGAGAGAAAATAGAAGTATCAAAAGTTGAGCTCTATGAAGGGAATACCACACCTCCAGATTTTCTTACTGAGAGTGAGCTGATTTCTCTAATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAATATATGTGAGCGAAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCACATTAGGGATAACTTTAGTAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATCCGTAGCTTTATTGAGCAACAAATTACTCTTATAGCTAAGGGCCAGGTAGATCATCATCGTGTGGTGCAGCATGTAATTGAACAGTTCAAGCAAAAGTTTTCTTACTTTGTCAAGAAGATTGAAGCCATGGATGCACTATTTGAAGCGCAGTTTTCTGCACTTGTTGATTCAGGGCGTATTATGAGTAAATGTGGTAAATGCTTGCGATATATGAAGTATATTTCTACCCAACCACCACGGTTGTATTGTGGCACATGTGAGGAAGTTTATTATCTTCCACAGAAGGGCACAATAAAGCTGTACAAGGAACTGTCTTGTCCTTTAGACAATTTTGAGCTTTTGATCTGCTCCGTGGCTGGCCCAGAGGGTAAATCATTCCCACTATGTCCTTACTGCTACAGCAATCCCCCATTTGAAGAGGGTGCTCATAGAATCTCGACAACTAAAGAAAAGTGCCTTGAATGCGACTCTTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGCAGACGGGGCTACGTTACACCGAGGTTGCATTCTTTGTGATGTATTACTACATTCCCTTGTAGAAATGAAATATGGAAGAGGCTTCAAGCGTATGAGTTCACGTGGAAGAGGAAGAGGAAGGGGAGGAAGAGGAAGAGGACGGGGTGGTAAAATGATGGATCCGAAAATGAGTTTTCGAGATTTCTAG 1998 0.4154 MSICLDIPLVIESSGFKINDVYRARFSSVTEKDVLNALANLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQSGYEILLEWQRSKLFDINVAMMFQKLVAEDGILEVTDISEKQETKGRPVGLNTVNLLKVASSALGFGPQTAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQRNNPTWGNYVEGLLTSGYQKPRSGTDVGDHPPITPMRSASEDMLGNDAWKLYQYICQYFIGTVSPDCKYVRKKVEFSVGGESFHCTGQHVITKGFTAIMPWLAINDKSIPSFTKGEKIEVSKVELYEGNTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFSYFVKKIEAMDALFEAQFSALVDSGRIMSKCGKCLRYMKYISTQPPRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSVAGPEGKSFPLCPYCYSNPPFEEGAHRISTTKEKCLECDSSIIEVDFNKKTTPLADGATLHRGCILCDVLLHSLVEMKYGRGFKRMSSRGRGRGRGGRGRGRGGKMMDPKMSFRDF 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02413 665 FunFam DNA topoisomerase 170 295 - -
Vifa2g02413 665 Pfam DNA topoisomerase 44 455 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 MobiDBLite consensus disorder prediction 634 649 - -
Vifa2g02413 665 MobiDBLite consensus disorder prediction 650 665 - -
Vifa2g02413 665 Gene3D Topoisomerase I, domain 4 170 295 IPR013826 -
Vifa2g02413 665 SUPERFAMILY Prokaryotic type I DNA topoisomerase 10 505 IPR023405 -
Vifa2g02413 665 Gene3D Topoisomerase I, domain 3 110 363 IPR013825 -
Vifa2g02413 665 SMART topIban2 20 116 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 199 213 IPR023406 GO:0003917
Vifa2g02413 665 Gene3D Topoisomerase I, domain 2 51 465 IPR013824 -
Vifa2g02413 665 MobiDBLite consensus disorder prediction 634 665 - -
Vifa2g02413 665 SMART topIaneu2 162 417 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 CDD TOP1Ac 47 465 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 PRINTS Prokaryotic DNA topoisomerase I signature 379 393 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 PRINTS Prokaryotic DNA topoisomerase I signature 204 213 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 PRINTS Prokaryotic DNA topoisomerase I signature 86 104 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 PRINTS Prokaryotic DNA topoisomerase I signature 281 297 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vifa2g02413 665 PANTHER PROKARYOTIC DNA TOPOISOMERASE 3 625 IPR000380 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02413 Vifa-Chr2 625148829 625156032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02413 K03165 - gmx:100791807 1071.23