Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02411 ATGAAGCACTTCATGCTTCCAAGAAACCCAATGGCGAGAGACACAACCGAGCTTCCATCTTCATCAAGCCCTAGCAGCTCCGCCAAAACCAGACCCTCTTCTCGCAAACACAAACCCTCCAAAGAAAACGATCCTCCTTCAGATCACAACATCATCGTCCCGTATTCACCCTCTCATGTCAAATTGAAGAGTCCGTTACCACCAAGACCGCCTTCTTCCAATCCTCTCAAACGTAAACTCGCTCTCGACGCCGTCGCCGCTGATAATTCACTCCCGGCAACTTCCGATTCCGGCGTTAAGGTTATTGTCAGGATGAGGCCGTTGCGGAAGGATAAGGACGAAGGAGATCCTATAGTTCAGAAGATTTCTGGTGATTCGTTATCGATTAATGGCCGTACTTTCACTTTTGATTCTGTTGCTGATGTTGAAGCTACTCAGCTTGATATTTTTGAGCATGTTGGAGTTCCTCTGGTGGAGAATTGTTTGGCTGGTTTCAATAGTTCTGTCTTTGCTTATGGACAGACGGGGAGTGGAAAGACATATACAATGTGGGGTCCTGCCAATTCTTTGGCTGAAGCAAAAGAGCAACAAGGACTTACACCCCGAGTTTTTGAAAGACTGTTTGCGCGCATAAACGAAGAGCAAACAAAGCATTCTGATCAACAGCTCAATTATCAGTGCAACTGCTCTTTTCTTGAGATATACAATGAACAAATCACAGATCTGTTGGATCCGAGTCAAAGGAACCTTCAGATTAGAGAAGACGTCAAATCAGGTGTGTATGTTGAGAATCTTACAGAGAATCAGGTGTCCACGATAGAGGATGTTACTCAGCTTTTATTGAAGGGATTATCAAACAGGAGAGTAGGTGCAACCAGTATAAATTCTGAAAGTTCCCGCTCACATACTGTTTTTATTTGTGTTGTTGAGTCTCGAGGCAAGAGTATAGCAGATGGTGTGAGCAGATTTAAAACCAGTAGAATAAATCTTGTTGATCTGGCTGGGTCAGAACGACAAAAATCAACAGGTGCTGCTGGAGAGCGTTTGAAGGAGGCTGGCAATATTAATAGATCACTTTCACAGCTTGGGAATTTGATAAACATTCTCGCGGAAGTCTCTCAAACAGGAAAACAGCGGCACATACCATACAGAGATTCCAGGTTGACATTTTTGTTGCAGGAGTCTCTCGGAGGAAATGCCAAATTAGCAATGGTTTGTGCTATTTCACCGGCACAAAGCTGTAGGAGTGAGACTTTCAGTACATTGAGATTTGCACAATGTGCCAAAGCCATCAAGAACAAGGCAGTGGTTAATGAAGTTATGCAGGATAATGTGAACCACTTGCGACAAGTGATACGACAATTAAGGGATGAACTACATCGAATTAAAGAAAATGGTTACAATCCAATGGACCCAAGTGGAGGTCATTCAGCAGCTTGGGTCCGAAAAAGCTTGAACATATTACAGTCTAGCCTTAATAGACCGCCACCGTTATGCCGTGTTGATGAAGATGGTGATGAGGAGATGGAGATTGATGAGGATGATGTTGAAGACCATGATGAAGTTTTCTGCAATGCTAATGTCAATTGTAATTTTGTATCAGAAAATGACAGCAAAATGAACACTGATGATCAAGATTTGGTCCAACCCAGTGAGGAAAATAATTGTGGTGTCTCTGGCAGTAAACTTATCGATGAAGAATCATCCTGTCCTGTGGGTGAATCTGACATTGAAAATTTCACTGGTTTTTCAGCCCCATATCCGCCTAGTGATTCTCCCAACGCTCTAGTGAATTGTGTCTCACCTGGTGACCTTAGCATAGTTAAGTGTGAAATATCTCCAAACCTGAAATCTCCAACTCCTAGTGTTTCTCCTAGAATCAGCACCAGTAGAAAAAGTCTTAGGACATCGTCAGGGGTGTCACCTTCGGAGAACGATGTTCATGTTGAGAGTGAATTAGGCATAAAAACTGGCAATCTGAAAAGCTCGGCTACTGCCTTTTCTAGTCAGGCCGGGCCAAGTTTCCTTACAAAAGCTGAAAATTTAGCCGCAAGCATTCGCCATGGTCTCGAAATTATAGATAGTCATCGAAGTGCAGCTTTGAGGCAGTCATCTTATAGGTTTTCATTACGACCAAGAGAATCTAGACCAACTTTCACAGTTGACAAAGTTGACGTGGGCGTGCAGACCTTTCTTGATGACAATGTTGAGGAAGATTATATGTTCACCTGTAGTAATTGTAAAAACAGAGCACAACTCGAGGTCAATGAGACTGACAATAGCTCGAACCTACAGTTAGTACCTGTCAATGAGATTGAAAATAGCTCGAACCTACAGTTAGTACCTGTCAATGAGATTGAAAATAGCTCGAACCCTAAGAAGCAAGTTCTCAAAGCAGTAGAGAAGGTCTTGGCAGGATCGATAAGGAGAGAAATGGCACTCGAGGAGATTTGTGCAAAGCAGACTAATGAAATAGCGCAGCTTAATCGTTTGGTTCAACAATACAAGAATGAGAGGGAATGCAATGCCATAATTGCACAGACAAGTGATGAAAAAATTCTTCGCCTTGAGAGCCTTATGGATGGTGTCTTGCCCACCGAGGAGTTCATGGATGAAAAGCTGGTAGTCCTTACCCATGAACACAAGATTTTAAAGGAGAAATACGATAATCATCCAGAAGTTTTGAAGATGGATATAGAGTTAAAAAGATTACAAGATGAACTACAAGAGTATCAAAATTTCTACAAATTGGGAGAGAGGGAAGTATTGATGGAAGAGTTACAAAGTTTAAGAAGCCAGCTTCAATTTTATATTGATTCGTCATCCACCGCAAGGAAGCAGTATCCATTACTGCAACTGACATGTCCATCTGAACCCAGTTTTGCTGCAACAACTCTCACTGCCATTCCAGAGTCAATAGTGGAAAGGGATGAGACAGGTGAAACTCTAGCATCAATCAGAGACAGTTTTGAAGTAAAACTTGAACAAGAAAGAATTAAATGGACTGAGGCAGAAAGCAGGTGGATTTCTCTTTCTGAAGAACTGAGAGCCGATCTTGAAGCTAACAGGTCGTTAGCTGAAAAGAGGAAACACGAATTACATGCTGAGAGGGAGTGTAATAAAGAACTTCAGGAAGCCATGCATATGGCTATAGAAGGACATGCACGACTTTTAGAACAGTATGCAGATTTGGAAGAGAAGCACGTCCAATTACTTGCAAGGCATAGAAGGATCCAGGAAGGAATTGAGGATGTCAAGAAAGCAGCTTCCAAAGCTGGGGTAAGAGGTGCGGAGTCCAAATTTATAAATGCCCTTGCTGCAGAAATTTCAGCATTAAAAGCTGAAAGAGAAAAAGAAAGGCGAATCTTAAGGGACGAAAATAGAGGGCTCCAGGCTCAATTGAAGGATACTGCAGAAGCAGTACAAGCTGCAGGTGAACTGCTTTTCAGGCTTAAAGAAGCCGAAGAATCTGTGATTAATGCACAGAAACGGGCTATGGGTGCAGAGCAGGAAGCTGCAAAGGCCTACAAACAAATTGATAAGTTGAAGAAGAAACATGAGAATGAGATTGTCTCACTTAATGAGCTTGTTGCAGAAGCACGTTTGCTGCACAAGGGATCGGTATCTCCGATTTATGATGTTGTAATGCCCAATTATGACGATGAATCAAAGGAGCCACACTGTGTCAATGATTGTGAGCTTGCACAATTAGCAGAACCATCCTGGTCCTCCAGTTATGACAGATGCAACATATAA 3756 0.4241 MKHFMLPRNPMARDTTELPSSSSPSSSAKTRPSSRKHKPSKENDPPSDHNIIVPYSPSHVKLKSPLPPRPPSSNPLKRKLALDAVAADNSLPATSDSGVKVIVRMRPLRKDKDEGDPIVQKISGDSLSINGRTFTFDSVADVEATQLDIFEHVGVPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANSLAEAKEQQGLTPRVFERLFARINEEQTKHSDQQLNYQCNCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTENQVSTIEDVTQLLLKGLSNRRVGATSINSESSRSHTVFICVVESRGKSIADGVSRFKTSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPAQSCRSETFSTLRFAQCAKAIKNKAVVNEVMQDNVNHLRQVIRQLRDELHRIKENGYNPMDPSGGHSAAWVRKSLNILQSSLNRPPPLCRVDEDGDEEMEIDEDDVEDHDEVFCNANVNCNFVSENDSKMNTDDQDLVQPSEENNCGVSGSKLIDEESSCPVGESDIENFTGFSAPYPPSDSPNALVNCVSPGDLSIVKCEISPNLKSPTPSVSPRISTSRKSLRTSSGVSPSENDVHVESELGIKTGNLKSSATAFSSQAGPSFLTKAENLAASIRHGLEIIDSHRSAALRQSSYRFSLRPRESRPTFTVDKVDVGVQTFLDDNVEEDYMFTCSNCKNRAQLEVNETDNSSNLQLVPVNEIENSSNLQLVPVNEIENSSNPKKQVLKAVEKVLAGSIRREMALEEICAKQTNEIAQLNRLVQQYKNERECNAIIAQTSDEKILRLESLMDGVLPTEEFMDEKLVVLTHEHKILKEKYDNHPEVLKMDIELKRLQDELQEYQNFYKLGEREVLMEELQSLRSQLQFYIDSSSTARKQYPLLQLTCPSEPSFAATTLTAIPESIVERDETGETLASIRDSFEVKLEQERIKWTEAESRWISLSEELRADLEANRSLAEKRKHELHAERECNKELQEAMHMAIEGHARLLEQYADLEEKHVQLLARHRRIQEGIEDVKKAASKAGVRGAESKFINALAAEISALKAEREKERRILRDENRGLQAQLKDTAEAVQAAGELLFRLKEAEESVINAQKRAMGAEQEAAKAYKQIDKLKKKHENEIVSLNELVAEARLLHKGSVSPIYDVVMPNYDDESKEPHCVNDCELAQLAEPSWSSSYDRCNI 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02411 1251 Coils Coil 1054 1074 - -
Vifa2g02411 1251 MobiDBLite consensus disorder prediction 552 571 - -
Vifa2g02411 1251 Coils Coil 438 465 - -
Vifa2g02411 1251 ProSiteProfiles Kinesin motor domain profile. 98 431 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 Coils Coil 1151 1203 - -
Vifa2g02411 1251 PRINTS Kinesin heavy chain signature 292 309 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 PRINTS Kinesin heavy chain signature 327 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 PRINTS Kinesin heavy chain signature 164 185 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 PRINTS Kinesin heavy chain signature 381 402 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 FunFam Kinesin-like protein KIN-12F 94 469 - -
Vifa2g02411 1251 SMART kinesin_4 96 439 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 MobiDBLite consensus disorder prediction 1 76 - -
Vifa2g02411 1251 MobiDBLite consensus disorder prediction 616 645 - -
Vifa2g02411 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 442 IPR027417 -
Vifa2g02411 1251 MobiDBLite consensus disorder prediction 14 30 - -
Vifa2g02411 1251 Gene3D Kinesin motor domain 90 465 IPR036961 -
Vifa2g02411 1251 Coils Coil 1016 1036 - -
Vifa2g02411 1251 Coils Coil 894 940 - -
Vifa2g02411 1251 MobiDBLite consensus disorder prediction 616 648 - -
Vifa2g02411 1251 Coils Coil 1102 1140 - -
Vifa2g02411 1251 Pfam Kinesin motor domain 125 431 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g02411 1251 Coils Coil 818 838 - -
Vifa2g02411 1251 ProSitePatterns Kinesin motor domain signature. 326 337 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa2g02411 1251 PANTHER KINESIN-LIKE PROTEIN KIN-12D 22 469 IPR044986 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02411 Vifa-Chr2 624545971 624552203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02411 88 463 Miscellaneous Gene Families AT4G39050 37.859 9.49e-62 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02411 K10400 - gmx:100785790 1801.56