Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02393 ATGCCTCCAATACCTATCAGCTCCTCCAACCATGTTTCTTCAACCACCTTCTTCTCCTATTCCGTCCATTCCTTTCCTCGTCGCAACTTCACCGCCACATCTTCATTTCGTGTCTTTTGCCAAACTCAATCCAAGACAGAGAAAACTGAGACAACAAGATTTTCTCCATTATTAGAAAGTTCTGGTAATGGTGTTGTGGCTTTAGAGGATTGGAAAGCAGTTCCTGATATATGGAGAACTTCTGTTGAGAATTTTGGTGATAAAACAGCTTTGATAGATCAATATCATGATCCTCCTTCAACTATGACATACAAACAGTTGGAAGATGCAATATTGGACTTTGCTGAGGGGTTGAGAGTTTTAGGAGTAAAACCTGATGAGAAGATTGCACTTTTTGCTGATAACTCATGTCGCTGGCTTATAGCTGATCAAGGCATGATGGCAATTGGAGCAATCAATGTTGTAAGAGGTTCAAGGTCATCAACTGATGAACTGCTGCAAATATACAACCATTCTGAAAGTGTTGCACTAGCTGTGGACAATCCTGAAATGTTTAATCAGATTGTAGAACCGTTTTATTCAAAGACTTCCATCAGATTTATTATTCTCCTATGGGGAGAAAAATCAAGCCTTGTTTGTGAAGGAAACAAAGAAATTCCAATCTATACATTCATGGAAGTCATACATTTCGGGCGAGAAAGTCGCAGGGCATTGTATGAGTCTCATGATGCAAGACAACAGTATAAGTTTGAAACAATAAAATCTGATGACATTGCTACTCTTGTGTACACAAGTGGTACTACTGGAAATCCGAAAGGTGTTATGCTAACCCACCAGAATCTTTTGCATCAGATCAAACACTTATCAGATGTTGTACCTACTAAAGTTGGTGATAGATTACTAAGTATGTTGCCTCCCTGGCATGCATATGAAAGAGCTTGCGAGTATTTCATTTTCTCGCGCGGCCTTGAATATATTTACACTACTGTGAGAAACTTGAAGGACGATTTGAGACTTTATCAGCCACATTTGATGGTTTCGGTTCCTTTAGTTTTTGAAACTTTGTACAGTGGGATCATGAAGCAGATATCTACAAACTCGCTTATTAGAAAGCATGTCGCTCTCACATTCATAAGGGTCAGCTTAAGATATATGGAATGTAAGCGAGTTTATGAGGGTAAATGTTTAACAAAGAATCAGAAATCACCTTCATATCTCTATGCAATGTTGGATTGGCTATGGGCAAGAACTATGGCTGCAATATTATATCCAGTTCATATGCTGGCAAATAAACTGGTTTACAGTAAAATCCGTTCAACCATTGGAATATCAACGGCTGCAATAAGTGGTGGTGGTAGCTTACCTTCTCATGTCGACAAATTTTTTGAGGCTATTGGTGTGAACTTGCAGAATGGATATGGTTTAACAGAAACTTCACCTGTTATTGCTGCTCGGCGACTTGGTTGTGACGTTATTGGATCTGTGGGGTATCCACTAAAGCATACAGAATTCAAGGTTGTAGATTCTGAAACTGGTGAAGTTCTTCCACCTGGTTCAAAGGGAGTTTTGAAAGTCAAGGGCCCACAATTGATGAAGGGATACTACAAGAATCCTTCAGCGACAAATCAGGCCATCGATAGGGATGGCTGGCTGGATACTGGTGACATAGGTTGGATAGCTCCCCACCATTCAATTGGGCGGAGCCGTAATTCTGGTGGTGTGATTGTTGTTGAAGGCCGTGCTAAAGACACCATTGTTCTTTCATCAGAAGGTGAAAATGTTGAACCAGGAGAACTTGAAGAAGCTTCCATGAGGAGTAACCTCATACAACAAATTGTTGTCATTGGCCAGGATAAGCGACGTCTAGGGGCTGTAATTGTTCCTAACAAAGAAGAAATCTTAAAGGCAGCAAGGGAATTGTCAATTATAGATTCCAATAGTTCAGATGTCAGTCAGGAAAAAGTGACCAAACTAATATATAATGAATTGAAGACCTGGACATCAGGGTTTCCGTTTCAAATTGGGCCAATCCTTCTTGTAAATGACCCCTTCACGATTGATAATGGGCTAATGACACCCACAATGAAAATTCGAAGAGATAGGATTATGGCTCAATACAAGGACCAAATAGAAAATATATACAAGTAA 2148 0.3985 MPPIPISSSNHVSSTTFFSYSVHSFPRRNFTATSSFRVFCQTQSKTEKTETTRFSPLLESSGNGVVALEDWKAVPDIWRTSVENFGDKTALIDQYHDPPSTMTYKQLEDAILDFAEGLRVLGVKPDEKIALFADNSCRWLIADQGMMAIGAINVVRGSRSSTDELLQIYNHSESVALAVDNPEMFNQIVEPFYSKTSIRFIILLWGEKSSLVCEGNKEIPIYTFMEVIHFGRESRRALYESHDARQQYKFETIKSDDIATLVYTSGTTGNPKGVMLTHQNLLHQIKHLSDVVPTKVGDRLLSMLPPWHAYERACEYFIFSRGLEYIYTTVRNLKDDLRLYQPHLMVSVPLVFETLYSGIMKQISTNSLIRKHVALTFIRVSLRYMECKRVYEGKCLTKNQKSPSYLYAMLDWLWARTMAAILYPVHMLANKLVYSKIRSTIGISTAAISGGGSLPSHVDKFFEAIGVNLQNGYGLTETSPVIAARRLGCDVIGSVGYPLKHTEFKVVDSETGEVLPPGSKGVLKVKGPQLMKGYYKNPSATNQAIDRDGWLDTGDIGWIAPHHSIGRSRNSGGVIVVEGRAKDTIVLSSEGENVEPGELEEASMRSNLIQQIVVIGQDKRRLGAVIVPNKEEILKAARELSIIDSNSSDVSQEKVTKLIYNELKTWTSGFPFQIGPILLVNDPFTIDNGLMTPTMKIRRDRIMAQYKDQIENIYK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02393 715 Pfam AMP-binding enzyme 79 587 IPR000873 -
Vifa2g02393 715 Gene3D Luciferase; Domain 3 489 559 - -
Vifa2g02393 715 PANTHER ACYL-ACTIVATING ENZYME 16, CHLOROPLASTIC-RELATED 35 715 - -
Vifa2g02393 715 Gene3D - 586 713 IPR045851 -
Vifa2g02393 715 CDD LC_FACS_like 97 702 - -
Vifa2g02393 715 ProSitePatterns Putative AMP-binding domain signature. 261 272 IPR020845 -
Vifa2g02393 715 SUPERFAMILY Acetyl-CoA synthetase-like 73 714 - -
Vifa2g02393 715 Gene3D - 445 488 - -
Vifa2g02393 715 Gene3D - 69 380 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02393 Vifa-Chr2 618358120 618365884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02393 31 715 Acyl Lipid Metabolism Gene Families AT3G23790 66.038 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02393 K01897 - gmx:100782583 1102.81