Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02382 ATGAGTACGGTTGACAAGATGCTCATCAAGGGCATCCGAAGTTTCGATCCCGAAAACAAAAACGTCATCACCTTCTTCAAACCCCTAACCCTAATCGTCGGCCCCAACGGTGCCGGTAAAACCACAATCATAGAATGCTTGAAGCTTTCCTGCACCGGTGAGTTGCCGCCAAATGCTAGGTCTGGTCACAGCTTCATTCACGATCCCAAGGTTGCCGGTGAAACGGAAACCAAGGGACAGATTAAGCTCCGGTTTAAAACCGCCGCTGGTAGAGACGTGGTTTGCATAAGGTCTTTTCAACTAACGCAAAAAGCATCCAAGATGGAGTACAAAGCAATTGAGAGTGTGCTTCAAACTATTAATCCTCATTCCGGCGAGAAAGTTTGCCTTAGCTATAGATGTGCTGATATGGATAGAGAGATTCCTGCGCTGATGGGTGTTTCAAAGGCCATTTTGGAAAATGTTATATTCGTTCATCAAGATGAAGCCAATTGGCCACTCCAGGATCCTTCCACGTTAAAAAAGAAGTTTGACGATATCTTTTCAGCAACTCGTTACACAAAGGCACTGGAGGTTATAAAGAAACTTCACAAGGATCAAGCTCAAGAGATAAAGACTTACAAGCTGAAACTAGAAAATCTTCAAACTCTTAAAGATGCAGCTTATACGCTCCGGGAAAGCATTGCACAGGATCAGGAGAAAACAGAATCTCAAAAAGATCAGATACAGCAGTTGGATGGAAGCATTAAAGATTTGGACACTAAAATTGATCATGGGGAAAAAACATTGAAACATTTGCTGGAGCTACAGAAGCAAATATCAGCTAAAACTACAGAAAGAAGCACTCTATTAGAGGGACAAGAAAGGCAACATGCTGATCTAGATTTTGAGTATGAAGAACCTGATGATGAGTTGAAGGAATTGAAGACCAAGTTTGATGAAAGGCTTGTAATTTCACGTTCACAAATAGGCAAGTTGGAAAGAGAGAAGCAGGACATTAGCATAAAAAGTCTTGCCCTTGGAAATGCCATCAATGAGTCTATCTGGGAGATCAGCAAGCTACAAACTGAAGAAGATGCTCACACGTCTCTGAAGAACGAACGAGATACTTGCATTCAAAATATTTTTTCTAGTTATAACTTAGGGTCTCTTCCAAAGACACCCTTCAGTGCTGTAGATGGTTTGAACCTCACTAAACGTATAAAATCAAGGTTGGGGGATCTTGAGAAGGATCTTGAAGATAAAAAGAAAGCAAATAAAACTGAACTCAAAATGGCATGGGATTCCTACTTGAGTGCAAGTGAAAGCTGGCAAAATACTGATGCTAAAATACAAACTAAGACAGAGAACAAGGCTGAAATTATGAAGCGCTTTGAAGAGAAGAAAGACGAGCTTGAGTCATTTGAACTTGAAATATCTAGTATAGACGTTTCTCATTTAGACGAGCGAGAAAGAAAATTGCATTTTCAGCTGGAGAGGATGACCAAGCAACGTGATGAAAGAGAATTTGAACTAAAGAAAAGTCAAATCGAAAAGGAAGTTCTTAATGTGGAGCAAAAGATTAAAGTTATCAATCGAGAGTTTGCTGCCATGGCTACTGATTCAAAGGAGAGAGAAAAATTATCTCTTTTGAAGGGAGAATTGGAGACAAAGAAGAAGCAACATAAAAAGATAATTGACGGCCAGAAAGATAAAATAAGAAGGGTGCTACAAGGGAGGGTTCCTCCTGATAAGGACGTTAAGAAGGAAATCACACAAGCATTAAGGACTGTTGCAGCCGAATTTGATGAGGTGAATGTGAAGTCTCGGGAAGTTGACAAGGAAGTAAATGTTTTGCAGATGAAAATACAAGAAGTAGACAATAACCTATCTAAACACCACAAGGATATGGAATCAAGAAAGAGATTTATTGAATCCAAGCTCCAGTCTTTGGATCAGCAATGTTCTGGAATCGATTCTTATCTCAAACATTTAGAGTCTATCAAGGAGAAAAGAGATGTACAGAAAAGCAAATATAACATTGCCGATGGTATGAGACAAATGTTTGATCCTTTTGAAAGGGTTGCTAGAGCTCATCATATTTGCCCCTGCTGTGAACGTTCTTTCTCGGCCGAAGAAGAAGATAGTTTTGTCATGAAGCAAAGAGCGAAAGCTGCCAGTTCCGCTGAACATATGAAAGTTCTAGCTGTGGAGTCCTCAAGTGCAGACTCTGATTATCAGCAGTTGGACAAGCTTCGTATGTGGTATGAAGAATATGTTAAACTTGGCAATGAGACAATCCCTAATGCTGAAAAGGAACTCCAGCAAGTCAAGGAAGAGTTGGATCATAAAACCCAGGCACTTGATGATGTTTTAGGTATTTTAGCTCAAGTGAAGACTGACAAGGAATTGGTTGAGATGGTGCTGCAACCTGTTGAAAATGCTGATCGACTTTTCCTTGAAATTCAAAATTTGCAAAAGAAAGTTGATGATTTAGAAAGTGAGCTTGGTTGTGCAGGACCAGGAGTGAGGACTCTAGAAGAAATTCAATCCGAGCTCGCTGCAGTGCAGGGAACAAAGGACAATTTGAAAACCGAGTTGGAGAAATTGGCGGAAGATCAGATGGATATGCAGAAAGATATATCAAGTATTCAAACACGGCTCTTGAAAGCAAGGGATGATAAAATGAATGCAGAAAAGAAATTGCAAGGTGTTAAAAGATTAGAAGAAGAATTAGAATGCTTGACTGAAGAAATGGACCAAATTGATCTTGATGTGAAGAGTCTGGTTGAAGCTGTTGAACCTTTATCCAAGCACAAAGATAAAATTCTTGCTGAATATAATGAACTGAAGATTAGACTTGACCTCGAGATTGAGAATCTGGCTGAAAAAAAGAGAATTTTTCAGCAAGAAGCCGAAGCAGTTTTTAGAATGACTTCTAAGATCGTAGAGTACTCTAATTTAAAGAAAGGAGACAAGTTGAAGGAGTTGAAGGAAAAGAAATCTCTATCAGAATCTCAACTGCAAAGTTGTGAAACCAGGATGCAGGAAATTACGGATGAAGTAGACAAAAGGAAAGATTTGATGCGAAATAATGATCAGGTTAAAAGAGTACTTGAGGACAACTTAAAGTACAGAGAAACAAAGGCCAGAGTAGATAAGCTATTATGCGAAATTGATACACTTGAAGAAAATATGTTGAAGGTTGGTGCACTTTTCACAATTCAGACGGAACTTGCAAAATTATCCAAGGAGAGGGAGAGGCTTCTTGAGGAGTTAAACAGGTGCAAAGGAACAGTGTCAGTTTACCAGAGCAATATTTCCAAAAATAAGATTGATCTAAAGCAGGCCCAGTACAAGGACATAGATAAGCGATATTTTGACCAGCTTATCCAGCTAAAGACAACTGAAATGGCAAACAAGGACTTGGACAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGAGAATTGTGGCAACAGACTTATAGAGGACAAGATATTGACTGCATTAGTATTCATTCTGATTCTGAAGGTGGTGGTACCCGGTCCTACAGTTACAGGGTTCTCATGCAAACTGGTGATGCTGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTACTGGCATCTCTTATCATACGGTTGGCCTTAGCGGAAACATTTTGCCTCAATTGTGGAATTCTAGCATTGGATGAACCAACCACAAATTTGGATGGACCAAATTCTGAAAGTCTGGCTGCTGCTATCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGAGTCGCAAAAGATGACTATCAGCACAGCATAATTGAATCTCAGGCGATATTTGACTGA 3951 0.3971 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTINPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRESIAQDQEKTESQKDQIQQLDGSIKDLDTKIDHGEKTLKHLLELQKQISAKTTERSTLLEGQERQHADLDFEYEEPDDELKELKTKFDERLVISRSQIGKLEREKQDISIKSLALGNAINESIWEISKLQTEEDAHTSLKNERDTCIQNIFSSYNLGSLPKTPFSAVDGLNLTKRIKSRLGDLEKDLEDKKKANKTELKMAWDSYLSASESWQNTDAKIQTKTENKAEIMKRFEEKKDELESFELEISSIDVSHLDERERKLHFQLERMTKQRDEREFELKKSQIEKEVLNVEQKIKVINREFAAMATDSKEREKLSLLKGELETKKKQHKKIIDGQKDKIRRVLQGRVPPDKDVKKEITQALRTVAAEFDEVNVKSREVDKEVNVLQMKIQEVDNNLSKHHKDMESRKRFIESKLQSLDQQCSGIDSYLKHLESIKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERSFSAEEEDSFVMKQRAKAASSAEHMKVLAVESSSADSDYQQLDKLRMWYEEYVKLGNETIPNAEKELQQVKEELDHKTQALDDVLGILAQVKTDKELVEMVLQPVENADRLFLEIQNLQKKVDDLESELGCAGPGVRTLEEIQSELAAVQGTKDNLKTELEKLAEDQMDMQKDISSIQTRLLKARDDKMNAEKKLQGVKRLEEELECLTEEMDQIDLDVKSLVEAVEPLSKHKDKILAEYNELKIRLDLEIENLAEKKRIFQQEAEAVFRMTSKIVEYSNLKKGDKLKELKEKKSLSESQLQSCETRMQEITDEVDKRKDLMRNNDQVKRVLEDNLKYRETKARVDKLLCEIDTLEENMLKVGALFTIQTELAKLSKERERLLEELNRCKGTVSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAAILRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDYQHSIIESQAIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02382 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Vifa2g02382 1316 Gene3D - 806 984 - -
Vifa2g02382 1316 Gene3D - 4 303 IPR027417 -
Vifa2g02382 1316 Coils Coil 1038 1058 - -
Vifa2g02382 1316 Coils Coil 937 964 - -
Vifa2g02382 1316 NCBIfam rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Vifa2g02382 1316 Coils Coil 1065 1092 - -
Vifa2g02382 1316 FunFam DNA repair protein RAD50 3 300 - -
Vifa2g02382 1316 Coils Coil 987 1007 - -
Vifa2g02382 1316 Coils Coil 808 828 - -
Vifa2g02382 1316 PANTHER RAD50 1 1313 - -
Vifa2g02382 1316 Pfam AAA domain 7 256 IPR038729 GO:0006302|GO:0016887
Vifa2g02382 1316 Coils Coil 398 418 - -
Vifa2g02382 1316 Coils Coil 839 925 - -
Vifa2g02382 1316 FunFam Os02g0497500 protein 1118 1315 - -
Vifa2g02382 1316 Coils Coil 444 471 - -
Vifa2g02382 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 289 IPR027417 -
Vifa2g02382 1316 Coils Coil 500 527 - -
Vifa2g02382 1316 Coils Coil 627 647 - -
Vifa2g02382 1316 Coils Coil 753 780 - -
Vifa2g02382 1316 Gene3D - 1056 1314 IPR027417 -
Vifa2g02382 1316 Coils Coil 197 217 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02382 K10866 - gmx:100818545 1904.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02382 2 615569858 615591225 Vifa2g02382 2 615569858 615591225 ECH