Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02348 ATGTCCGGACCTACATCTACAACACCTACTAGTGGTGCCCAAAAGCTCTCTATGTTTGCTGCCAAATCTGGATTTGTCATCCCCAAAAACAAGTTATTAGGATCCTTACTTCCCATTTCACGAGGGGCTAAAAAAGATGCCCTCACTGGACTCATCAATGAAGAATCTTCAAAACAAATTGAGAGGAAATCAAGATGGGGGCCTGATCCCACGCAGGATGCATCTGTCAGGAGGGCAAAGGTTTTGGCGTTGCAGATTCGAGTGGATCAAATTTCAAAGCAGTTGGAATCAGATAATCTAGAGATTGGAGCCACTCAGAACTCAGCATTGGTGGATGAGAACCCAGATGAAAACAAGTCTGGTTCTCAAGTTAATAGCAAGAAGTCAGAAATGCTTGAACTCGAAAAGCGGGAAACAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCGCCTGGTTTTAAACCACTGTTAAAAGAGCACAGTATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAAATTCATTGGTCTAATATATGGGCCTGGAGGTGATAATCAAAAGCGACTAGAGAAGGAAACTGGTGCCAAGATAAAAATTCGTGGAACCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGTACTGATGTCCAGTGCAGTTACAAAGAGATGCATGTTAACATAACAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCGTTGAACTACTAATTTCCTCTGTAACTGGGAGTTCAGCTGCTGGTTCCACACCTTCTGTATCTGTCTTTGGGGACAGCACTAATGGTCTGAATCAAAACCAAGACCCCCCATCTCATGCAATTTCTCTATCTCTGTCAAACCGGGCTGTGTTTCAACCAGCAGCCACTACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCAGCTGCTCCATCTCACACCCCTTCATTTGCTTCTTCTGGCAGTGTAGTCCCTCCAAATCCACCACACGTTGCTAGAACTCCTCATTTTCCATCACAGACAATGAGCCCTTCAAATATGATTTCAGCTTTTGGTGCTCAACCTACATCTATTACTGGATTCCACCAGATTATTCCAAATCAGCAGTTTTCTATGCATGCACCACCACCAACACAATTCCTACAACATTCACAATGGACTCAAACAACTCCTTTTGGTCACGTTGGGCCACCAAGAAATCCTTCTGTAATACCTGCACAGAATTTGTCAGCAGCAACAAGTGCTTCACTTTCTTTTCCAGTTTCCTTAAGGCAACCAACATCAACAGGACACCTCCAGACATCAGTGTCTTCAATGCCTCAACCTATGTCTGGTATATCACCGTCACCAATAGCTAACCAGCCATCAACCTCTCAAGGTGTATCTTCTGGACTGAGTGGAGGACCCGTCAATATGGGGCCAATGGCTCCACCTGCTGTTCCCCCTGCAAGACCTGTTTCTCTAGGTCCACAACCAGATATTGAATATAAGCCACCCCAGCCAAATGTGTCGATGATGCCACAACCTGGAAGTATTCATCCACACCATGCAGGAATGTCACCGAGACCACCATCATCTTTGGGACCAATTCCAGGAACTGTTAATTCAACTGGAAACCATTTATCAAGACCTGTTTCATTTCCATCGCCAGGAATATCCTCTTCATTTCCATTAGCTCAACAATCAGGAATACCTAATTCTGCCTCTCACTACACCCACATAAACCCACTGGCCTCCATGCCTTCAAATTCTGGAATTTTTACTTTTCAAGAACAGCGACCTAATGCAGACTACTATCAAGTGGTTCCCAGGCCAAGCAGTCAAGCTACCACTCAGGGTGGTACACAAGAGCCACCTTCCGGTCCCCGGCCTCCACCATTTGGGTTTTCTGTTGCTGATCAGCCTTTTCAAAGCTTTCCAAGGGCACAAGTCTCCAACCGAATGGATCAAGCTCAAGCTTATGCATCTGCTGCTCCTTTTGGTGGAAGACCGGGCTCTGTCTCAATTCCACCCCAACAACACCCTGCATTTCCCTTTGCTGGTCAACCTTCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTACCCCTCAAATGCCAAACTTGCCCAGTCCTGGGGTCCAAAGAGGTATGCACAATCAACAATGCTATCCTGCTCAGGGAACATGGCCTATGAATCAGAAGTTTGGCAGCAACCCATCCTTGGCATCCAGTAAGCCAGCGTATCATGCAGACCAAATTTATGATCCCTTTTCACCCACATCTGTTGCATCTCCACACCAGAAAGGTAATCTTGGAAAATGA 2346 0.4514 MSGPTSTTPTSGAQKLSMFAAKSGFVIPKNKLLGSLLPISRGAKKDALTGLINEESSKQIERKSRWGPDPTQDASVRRAKVLALQIRVDQISKQLESDNLEIGATQNSALVDENPDENKSGSQVNSKKSEMLELEKRETIGEILKLDPSYKPPPGFKPLLKEHSIPLPVQEYPGYKFIGLIYGPGGDNQKRLEKETGAKIKIRGTKADTGEKGEIKPGTDVQCSYKEMHVNITADSFDKVDAAISIVELLISSVTGSSAAGSTPSVSVFGDSTNGLNQNQDPPSHAISLSLSNRAVFQPAATTQMQGDHFQYSGSWFSAAPSHTPSFASSGSVVPPNPPHVARTPHFPSQTMSPSNMISAFGAQPTSITGFHQIIPNQQFSMHAPPPTQFLQHSQWTQTTPFGHVGPPRNPSVIPAQNLSAATSASLSFPVSLRQPTSTGHLQTSVSSMPQPMSGISPSPIANQPSTSQGVSSGLSGGPVNMGPMAPPAVPPARPVSLGPQPDIEYKPPQPNVSMMPQPGSIHPHHAGMSPRPPSSLGPIPGTVNSTGNHLSRPVSFPSPGISSSFPLAQQSGIPNSASHYTHINPLASMPSNSGIFTFQEQRPNADYYQVVPRPSSQATTQGGTQEPPSGPRPPPFGFSVADQPFQSFPRAQVSNRMDQAQAYASAAPFGGRPGSVSIPPQQHPAFPFAGQPSPRSQVPQMGMRNFIPTPQMPNLPSPGVQRGMHNQQCYPAQGTWPMNQKFGSNPSLASSKPAYHADQIYDPFSPTSVASPHQKGNLGK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02348 781 Gene3D - 76 153 IPR047086 -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 739 781 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 432 476 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 432 512 - -
Vifa2g02348 781 PANTHER RNA-BINDING PROTEIN RELATED 49 619 IPR045071 -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 613 643 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 107 129 - -
Vifa2g02348 781 Gene3D K Homology domain, type 1 156 275 IPR036612 GO:0003723
Vifa2g02348 781 MobiDBLite consensus disorder prediction 47 73 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 107 128 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 739 753 - -
Vifa2g02348 781 FunFam Splicing factor-like protein 1 isoform A 161 264 - -
Vifa2g02348 781 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 255 IPR036612 GO:0003723
Vifa2g02348 781 ProSiteProfiles Type-1 KH domain profile. 176 247 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 327 349 - -
Vifa2g02348 781 SMART kh_6 159 252 IPR004087 GO:0003676
Vifa2g02348 781 MobiDBLite consensus disorder prediction 484 512 - -
Vifa2g02348 781 MobiDBLite consensus disorder prediction 613 627 - -
Vifa2g02348 781 Pfam KH domain 176 245 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02348 Vifa-Chr2 606733196 606737515 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02348 K13095 - gmx:102668428 915.99