Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02345 ATGTGCTCAGTCTCATCCAATGCAACATGTCCAACCCTTGTGACTTCTCCTTCTTCTTCCCGTTCATTCCCTTGTTCCTCTGTCAAAACCACCATCGTTACCCTCCCAACCACTATTTCCAATATATCCGTATCAGCCACACCCAAACATGTCTGGACCCGAACACTCCGTTCTCCAAATTCCAACACCAACAAACAACAACGACAACAACGTCGTACCAGAACCCGACAACATCATCACAAACCCCCTTATCTAGACCGCAACATAAACATGAACGAAGTCTTAACCTCAATCGCACAAACCAACAACATCGAACAACTCTACGCAGTCATGTCCCCTTACAACGAAAGACAACTCTCAATCCGTTTCATGGTTTCCCTCCTCTCCCGTGAACCCGATTGGCAACGCTCCATCGCGCTCCTCGATTGGATGAACGAAGAAGCTCAATACTCACCTTCCCTCTCCGCTTACAATGTCGTCTTACGTAACGTACTTCGCGCTAAACAGTGGCAGTTTGCACACGGACTGTTCGATGAAATGCGTCAAAAGGGTCTTTCACCTGATAAATACACTTACTCCACACTCATTACGTATTTTAGTAAACAGGGTTTGTTTGATTCCTCTTTCTTTTGGCTACAACAGATGGAGCGTGATAGAATTTCTGGGGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGGAAAATGTGTGATTATTCCAAAGCCATTTCCATTTTCAATACATGTAAAGCTTCTGCTAAATTTGTACCTGATCTTATAGTTTATAATACCATGATTAGTGTGTTTGGTAAGGCTAAGCTCTTTCAGGAGGCTCGTCTTCTTATTCAAGAGATGAGGGATAATGGTGTTAGCCCGAATACTTTTAGTTACTCGACGCTTCTTGCGATTTATGTTGATAATCAGAAGTTTGTCGAGGCGCTTTCTTTGTTTGCGGAAATGAATGAAGTTAAATGTCCGATTGATCTTACTACGTGTAATATCATGATTGATGTTTATGGTCAGGTGCAAATGATCAAGGAAGCTGATGGCTTCTTCTGGGGTATGACGAAAATGGGAATTGAACCGAATGTTGTTACTTACAACACTATCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGAGAAGCGGTTCATCTTTTTAGTTTGATGCAAAGGAAGGGTATACCTCAGAATGTTGTTACATACAACACCATGATTAGTATTTATGGAAAGTCTCTTGAGGATGAGAAGGCGACGAATCTCATTCAAGAAATGCAGAGTAGAGGTATTCAACCGAATGCCATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAATTGGATCGGGCTGCGATGCTGTTTCACAAGTTAAGGACTTCTGGAGTTAAAATTGACGAGGTTTTATATCAGACAATGATTGTTGCGTATCAGAAAGCTGGATTAGTTGCTCATGCGAAAAGGCTACTTCATGAGCTCAAGCAAGAGGATAATGTTTCCAGGGAGACGGCAATCACAATACTCGCCAAAGCCGGTAAAATTGACGAGGCTATGTGGGTTTTCCGACAGGCTTTTGATGCGGGAGAGGTGAAAGACATATCTGTATTTGGGTGCATCATTGATATTTTCTCAAGGGACAGAGAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCCGATTCTAATGTTATTGCACTCGTGCTGAATGCTTTTGGTAAGCTGCGCAAGTTTGAGAGAGCAGAAGCTTTATATAAACAGATGTATGAAGAAGGGTGTGTTTTTCCGGACGAAGTTCATTTTCAAATGCTTGGTTTATATGGCGTTAGAATGGATTTCAAGATGGTGGAATCATTATTTGAGAAGCTAGATTCACATCTCAATATCAACAAGAAGGAGTTGCATTTTGTTGTTGCTAACATTTATGAAAAAGCAGGTAGATTTAATGATGCTTCCCGAATCTGGAGCAGGATGAATCACAAAACAATAAAAAGTTATGGTAATGCTTAG 2037 0.4124 MCSVSSNATCPTLVTSPSSSRSFPCSSVKTTIVTLPTTISNISVSATPKHVWTRTLRSPNSNTNKQQRQQRRTRTRQHHHKPPYLDRNINMNEVLTSIAQTNNIEQLYAVMSPYNERQLSIRFMVSLLSREPDWQRSIALLDWMNEEAQYSPSLSAYNVVLRNVLRAKQWQFAHGLFDEMRQKGLSPDKYTYSTLITYFSKQGLFDSSFFWLQQMERDRISGDLVLYSNLIELSRKMCDYSKAISIFNTCKASAKFVPDLIVYNTMISVFGKAKLFQEARLLIQEMRDNGVSPNTFSYSTLLAIYVDNQKFVEALSLFAEMNEVKCPIDLTTCNIMIDVYGQVQMIKEADGFFWGMTKMGIEPNVVTYNTILRVYGEAELFGEAVHLFSLMQRKGIPQNVVTYNTMISIYGKSLEDEKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEVLYQTMIVAYQKAGLVAHAKRLLHELKQEDNVSRETAITILAKAGKIDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRDREYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFERAEALYKQMYEEGCVFPDEVHFQMLGLYGVRMDFKMVESLFEKLDSHLNINKKELHFVVANIYEKAGRFNDASRIWSRMNHKTIKSYGNA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat family 330 372 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat family 258 302 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat family 152 199 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat family 399 442 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 156 188 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 190 223 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 577 606 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 366 399 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 261 295 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 401 435 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 436 470 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 296 329 IPR002885 -
Vifa2g02345 678 NCBIfam pentatricopeptide repeat 538 570 IPR002885 -
Vifa2g02345 678 Gene3D Tetratricopeptide repeat domain 236 344 IPR011990 GO:0005515
Vifa2g02345 678 Gene3D Tetratricopeptide repeat domain 510 675 IPR011990 GO:0005515
Vifa2g02345 678 Gene3D Tetratricopeptide repeat domain 64 235 IPR011990 GO:0005515
Vifa2g02345 678 MobiDBLite consensus disorder prediction 52 85 - -
Vifa2g02345 678 Pfam PPR repeat 508 526 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat 577 602 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat 471 499 IPR002885 -
Vifa2g02345 678 Pfam PPR repeat 538 566 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vifa2g02345 678 Gene3D Tetratricopeptide repeat domain 345 509 IPR011990 GO:0005515
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Vifa2g02345 678 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 345 502 - -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Vifa2g02345 678 MobiDBLite consensus disorder prediction 52 68 - -
Vifa2g02345 678 PANTHER OS07G0661900 PROTEIN 133 294 - -
Vifa2g02345 678 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g02345 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02345 262 613 Glycosyltransferase AT1G05670 25.510 2.10e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02345 - - mtr:11437358 1113.6