Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02340 ATGAGTATACCATTTTCTGTGGCAGTTAACCCTTCCATTATTAGGAATAATAGGAAATCGTGTGGTAGAAGATATGCTGTTATAACATCAGAATTAACCATGGTTCCAAAACATAAAGTTGTTGAAAAGCAATCTCGGATAGCCGATTTTGGTACTCCCTGTCGTAGTAACCTCAAGCCACAGTTTGAGCCTAGCTTTCTCAACAACGCGTATGAAATGTGCAGAAACATCTGTGCCGAATATGCCAAGACATTCTATCTAGGAACTTTACTTATGACCGAAGAAAGACAGAAGGCTATATGGGCTATATACGTTTGGTGCAGGAGGACAGATGAATTGGTGGATGGTCCTAATGCTGACTATATGAGCTCTGCTGTTCTTGATAGATGGGAGGATAGATTGCATGACATTTTCAATGGACAACCCTATGATATGCTTGATGCTACTCTTACCGATACAATTTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACGAGGAAAACGCGATACAAAAATTTCGAAGAATTATATCTTTACTGCTACTATGTGGCGGGAACTGTTGGGTTGATGAGTGTTCCGGTAATGGGAATCGCGCCGGAGTCTCTCATTCCCACTCAAAGTGTATATAAATCAGCATTATATCTTGGTATCGGAAATCAACTCACAAACATTCTTAGAGATGTAGGGGAGGATGCATTAAGAGGTAGAGTGTATCTTCCACAAGATGAACTTGGTGAGTTTGGTTTATGTGACAAAGATGTTTTCTCAAGAAAAGTGAGTGAAAGATGGAAAGAGTTTATGAAAGAGCAGATTGCAAGGGCAAGATTCTACTTCAACTCTGCAGAAGAAGGAGCTTATCACCTTGACAAGGCCAGCCGTTGGCCGGTTTGGTCGTCTTTAATATTGTACCGCAAGATCTTAGATGCAATCGAAGACAACGATTATGACAATTTGACAAAACGAGCTTATGTAGGACGAACTGAGAAGTTTGTGTCATTGCCTGCAGCTTATACTAGATCTCTCTCAATTCCCAGGACCAAATTGCATTCTTCCTTCACAAAACTTATGTAG 1101 0.4042 MSIPFSVAVNPSIIRNNRKSCGRRYAVITSELTMVPKHKVVEKQSRIADFGTPCRSNLKPQFEPSFLNNAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEDRLHDIFNGQPYDMLDATLTDTISKFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPTQSVYKSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELGEFGLCDKDVFSRKVSERWKEFMKEQIARARFYFNSAEEGAYHLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYTRSLSIPRTKLHSSFTKLM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02340 366 ProSitePatterns Squalene and phytoene synthases signature 2. 225 250 IPR019845 GO:0016765
Vifa2g02340 366 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 37 352 - -
Vifa2g02340 366 FunFam Phytoene synthase chloroplastic 63 345 - -
Vifa2g02340 366 SFLD Squalene/Phytoene Synthase Like 68 349 IPR002060 GO:0009058
Vifa2g02340 366 SFLD Phytoene synthase like 68 349 IPR044843 GO:0004311
Vifa2g02340 366 SUPERFAMILY Terpenoid synthases 69 352 IPR008949 -
Vifa2g02340 366 ProSitePatterns Squalene and phytoene synthases signature 1. 189 204 IPR019845 GO:0016765
Vifa2g02340 366 Gene3D Farnesyl Diphosphate Synthase 64 346 IPR008949 -
Vifa2g02340 366 Pfam Squalene/phytoene synthase 81 336 IPR002060 GO:0009058
Vifa2g02340 366 CDD Trans_IPPS_HH 72 339 IPR033904 GO:0004311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02340 Vifa-Chr2 604399704 604401409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02340 K02291 - gmx:100782394 550.821