Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02229 ATGGTGAAGCTTCCATTCTTCGATTCGACTCAATCTTCTTCATCTTCTGCGCGATCTTTGTATCATCCGAATATCAAGAATTTCAACCGCCGGTCACTGCAATTTGAGTGTTCATTCAGTATATTAAATCCATCCTCTTTGTCGAGAAAGGGTCTTGATGTTCATACTGTCCATCTCCATAGGCTACTGATGCGCTTTCAACATTTAGAGTCTTTATCCTTATGTGGTTGTACGGAGCTCAATGATTCAGGATTAACCCGTCTGCTAAGCTATGGTTCGAATTTACAGAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGTAGAGGCTTGGTCTTGTAAGCTCAACCCAGAAGGGGTGACGGGAATAATTAGTGGCGGTGGTATAGAGTATCTAGACGTATCTTGTTTAAGTTGGTATCCCTTAGGAGATACCTTGCTTGGAATAAGATTGTCCTCAAACCTCAAAGTCCTTAACTTTCGAATGTGCAGATCTGTTTCCGATACTTCTATTGTTGCAATAGCCATGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGGATATCTGGATGGCAAGCAGTGGGGTTATATTGTCAGAATTTGAAGAGACTGCATGTTAATCGATGCCGTAATCTCAATGATAATGGCCTGCAGGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTGCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGGATGAAGAGGTAATGTGCATCAATCCTTACTCCCCATTCAGATGA 1104 0.413 MVKLPFFDSTQSSSSSARSLYHPNIKNFNRRSLQFECSFSILNPSSLSRKGLDVHTVHLHRLLMRFQHLESLSLCGCTELNDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHVEAWSCKLNPEGVTGIISGGGIEYLDVSCLSWYPLGDTLLGIRLSSNLKVLNFRMCRSVSDTSIVAIAMGCTLLEEWNLALCHEVRISGWQAVGLYCQNLKRLHVNRCRNLNDNGLQALRDGCRSLSVLYLNGCVHVTPFALELFKSHRANVCIKDEEVMCINPYSPFR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02229 367 PANTHER UNCHARACTERIZED 44 227 - -
Vifa2g02229 367 SMART LRR_CC_2 92 117 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 243 268 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 295 320 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 66 91 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 144 169 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 321 346 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 118 143 IPR006553 -
Vifa2g02229 367 SMART LRR_CC_2 170 195 IPR006553 -
Vifa2g02229 367 Gene3D Ribonuclease Inhibitor 114 190 IPR032675 -
Vifa2g02229 367 Gene3D Ribonuclease Inhibitor 24 113 IPR032675 -
Vifa2g02229 367 SUPERFAMILY RNI-like 39 346 - -
Vifa2g02229 367 Gene3D Ribonuclease Inhibitor 191 354 IPR032675 -
Vifa2g02229 367 Pfam Leucine Rich repeat 144 166 IPR001611 GO:0005515
Vifa2g02229 367 Pfam Leucine Rich repeat 294 317 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02229 Vifa-Chr2 576548356 576549850 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02229 K10268 - gmx:102667402 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02229 2 576548356 576549850 Vifa2g02229 2 576548356 576549850 ECH