Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02177 ATGGACACCATTGATTTTGTGTCCTCAGCGATCATCTCCACTCACTCTAACCCCAAACTCCTTTCATTCTCCAAACCAAAACCCAAATTCAAAATTATAACCAAACCTTACTCTCTCACTCACTCCTTTCGTCTTTCTAACCTCAGAGTTTCCGCCATCAAGGATCACAATCCCGACTCACAAGTAACTAAACCTCCATCGGTGGAAAATGGCGATGAAGAACTTGACCTTGGATGGTTACCCGCTTTCCCTCACGTTCTCATCGCTTCAATGTCCAATTTCACATTCGGTTATCATATCGGGGTCATGAATGGTCCTATTGTTTCAATTGCTCAGGAACTTGGTTTTCAGGGAAACTCTTTCATTGAGGGACTTGTTGTTAGTATATTTATTGCTGGCGCGTTTATTGGGAGCTTAGCCACTGGTTCTTTGGTTGATAAACTTGGTTGTCGTCTCACTTTTCAAATTGATACCATACCCTTGATCCTTGGGGCCATAATAAGTGCAAATGCACACTCTTTGGATGAGATACTCTGGGGAAGGTTTCTTGTTGGTCTTGGTATAGGTGTGAATGCTGTTCTTGTTCCGATATATATATCTGAGGTTGCTCCAACAAAATATAGGGGTTCCCTAGGGTCCTTATGTCAAATTGGCACTTGTCTTGGTATTATCGCATCACTATCTCTTGGAATTCCTTCTGAGAATGATCCACACTGGTGGAGGACAATGCTGTATATTGCAAGTGTCCCTGGTTTTATTGTTGGTCTGGGTATGCAATTTGCTGTTGATAGCCCACGCTGGCTTTGCAAGGCTGGGAGAATAAATGATGCGAAAAAAGTAATACGGGAGCTTTGGGGAGCATCTGAAGTTGAGAGTGCAATTGAAGAGTTTCAATCTGTCAGCAAGAATGATGGCAGTGATTTAGACAGCAGATGGTCAGAGATCTTGGATCAGCCACATTCTAGAGTTGCCTTCATTGGAGGTGCTCTTTTTGTACTTCAGCAGTTTGCAGGCATAAATGCAGTTCTTTATTTTTCATCATTGACCTTTCATGATGTCGGAATTCAAAGCAGTGCTCTAGCGAGCTTGTTTGTCGGACTTACAAACTTTGCAGGTGCCCTTTGTGCTTTATACTTAATTGATAGGGAAGGGAGGCAAAAACTTATTATAGGAAGCTATTTAGGAATGGCGATTTCAATGTTTCTTGTGGTCTATGCTGTCATCTTTCCATTGGATGAGCAAATCAGCAACAACTTATCGATATTAGGAACTATCATGTATATATTCTCTTTTGCAATTGGAGCTGGCCCTGTAACTGGCATCATTATACCAGAGCTTAGCAGCACCAGGACACGAGGGAAGATCATGGGGTTCAGTTTCTCAACCCATTGGGTTTGCAACTTTGTGGTGGGATTGTTCTTCCTTGAGTTGGTGGAGAAATTTGGAGTTGCACCGGTATATGCTAGCTTTGGAGCAGTTTCCCTGTTAGCTGCGGCATTTGCCCATTACTTCTTGGTAGAAACTAAGGGGCGATCTCTTGAAGAAATTGAACGGTCCTTAAACCCGAAAGCTTGA 1575 0.4267 MDTIDFVSSAIISTHSNPKLLSFSKPKPKFKIITKPYSLTHSFRLSNLRVSAIKDHNPDSQVTKPPSVENGDEELDLGWLPAFPHVLIASMSNFTFGYHIGVMNGPIVSIAQELGFQGNSFIEGLVVSIFIAGAFIGSLATGSLVDKLGCRLTFQIDTIPLILGAIISANAHSLDEILWGRFLVGLGIGVNAVLVPIYISEVAPTKYRGSLGSLCQIGTCLGIIASLSLGIPSENDPHWWRTMLYIASVPGFIVGLGMQFAVDSPRWLCKAGRINDAKKVIRELWGASEVESAIEEFQSVSKNDGSDLDSRWSEILDQPHSRVAFIGGALFVLQQFAGINAVLYFSSLTFHDVGIQSSALASLFVGLTNFAGALCALYLIDREGRQKLIIGSYLGMAISMFLVVYAVIFPLDEQISNNLSILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVVGLFFLELVEKFGVAPVYASFGAVSLLAAAFAHYFLVETKGRSLEEIERSLNPKA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02177 524 CDD MFS_GLUT_like 88 507 - -
Vifa2g02177 524 Gene3D MFS general substrate transporter like domains 82 522 IPR036259 -
Vifa2g02177 524 ProSitePatterns Sugar transport proteins signature 2. 183 208 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 PANTHER SOLUTE CARRIER FAMILY 2 76 521 IPR045263 -
Vifa2g02177 524 PRINTS Sugar transporter signature 421 442 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 PRINTS Sugar transporter signature 93 103 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 PRINTS Sugar transporter signature 334 344 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 PRINTS Sugar transporter signature 178 197 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 ProSiteProfiles Major facilitator superfamily (MFS) profile. 85 509 IPR020846 GO:0022857
Vifa2g02177 524 Pfam Sugar (and other) transporter 86 518 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 NCBIfam sugar porter family MFS transporter 83 516 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa2g02177 524 SUPERFAMILY MFS general substrate transporter 77 517 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02177 Vifa-Chr2 565452992 565458456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02177 102 523 Organic Solute Cotransporters AT1G05030 80.332 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02177 - - gmx:100776209 815.453