Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02119 ATGGCTACAACCAAAACTCATCATAATGTGAAGGCCTTAGTCACTGTGAAACATAGTGATGTTGGTCTTATCAAGAATATTGTTACTGGTATTTTTGGTAATAGTAACTTGGTTTTGGAGCTAGTCGGTGCTCAACTTCATTCAAATGCGAACTCGGAGAAAAAGACGATAAAAGGAAAAGCACACGAGACTGAGAAAAAAGAGAATGATGCAGAATATGAAGCAACTTTTGTGGTACCAGCAGATTTTGGAAATGTTGGTGCTGTTTTGGTTGAAAATGAACACGGCAGTGAGATATTTCTAAAGAATATAGTCCTTGATGGTTTCCCTGATGGTCCGGTTCACCTTTCGTGTCAATCATGGGTTCAACCAAAGCATGATTCTCCTACTAAGAGAGTTTTCTTCACTAACAAGATGTATTTGCCATCACAAACACCAAGTGGATTAAGAAAGCTGAGAGAAAATGAGCTGAAAGAATTAAGAGGGAATGGTGAAGGTGAAAGAAAAAGCTCAGACAGAATCTATGATTATGATGTGTACAATGATCTTGGTGATCCTGATATCAACAGTAAACTCAAAAGGCCTGTTCTTGGTGGCAACAAACAGTATCCATATCCTAGACGCTGTCGTACCGGTCGAAAGCATTCCAATACAGATCCATCATATGAAAAGAGAGATTTGAATTTCTATGTTCCTCGCGACGAGGCATTTGCTGACATAAAGAAGATACAATTCAACGCAACTACAGTTTCGTCAGGAGTAAAAACAGTTTTGGAATCTTTAGATACAATTTTCACTGATATAGATCTTGGATTTGATAGTTTTGAAGACATAGACACACTTTTCAAAGATGGATTTCAGTTACCTACATCTCTTGATTCCAATAACTTAAACTTGCTCCAAAAAGTCATTCCTAGGTTTCTTAAGGCTGCAAATGATAGCCAAAAGGTTTTGCGCTTCGATACACCAGAAGCACTTAAAAGAGACAAATTCTTTTGGCTATCAGACGAGGAATTTGCAAGGGAGACATTGGCAGGGGCCAATCCATATAGCATCCAATTAGTCAAGGAATGGCCTATAAGAAGTAAATTAGATTCCCAAATTTACGGTCCACCAGAATCAGCAATCACTAGAGAAGTCATTGAGTCGCAGATAATTGGTTATACCACACTTGAAGAGGCCATTCGAGAGAAGAAAATGTTCATGCTAGACTACCATGATTTATATATACCATATGTAAGCAAAGTGAGGGAATTGGAGAATACTACACTGTATGGATCAAGAACATTGTTCTTCCTCACCAAACAAGGCACATTAAAGCCACTTGTTATTGAGCTTACTAGACCGATCATCGGTGACAAACCTCAATGGAAACAAATTTTCACACCTGCTTCTGATTCGACAAATCTTTGGCTTTGGCGGCTTGCAAAAGCTCATGTTCTTGCTCATGATACTGGTTACCATGAACTTATAAGCCACTGGTTAAGGACTCATTGTGTTGTAGAACCCTTTGTCATTGCAACAAATAGACAGCTTAGCATCATGCATCCAATCTACAAGTTACTACATCCACATCTCAGATATACTTTGGAGATAAATGCACTCGGTCGTGAGATTCTTATTAATGCTTACGGAGTCATTGAAGACTCATTCTTTACTAAAAAGTATTCAATGGAATTATCGGCTGTGGCATATGATAAGCTTTGGCAGTTTGATTTGCAGGGACTACCAAATGATCTTATTTATAGAGGAATGGCTGTGGAAGACCCTAATGCACAACATGGAGTAAAGCTAGCAATTGAAGACTACCCTTTTGCGAATGACGGTCTTCTCATATGGGATGCTATAAAACAATGGGTCACAGAATATGTCAATCATCACTATCCAAGTCCAAGCATCATAGAATCTGATCAAGAGCTTCAAGCATGGTGGACAGAAATTCGAACAAAGGGTCACGGAGACAAATCAGAAGAACCATGGTGGCCAAAACTCAAAACACAGAAAGACCTTATTGATATCATTACCACCATAGCTTGGGTAGCATCTGCTCATCATTCAGCTACAAACTTTGCACAATATGCTTACGGAGGCTATTTTCCTAACAGACCAACGGTCGCTAGAAACAAAATGCCAACAGAAGACCCTACAAAGGAAGAATGGGAAAAATTCATCAACAAACCCGAGCAAACACTTTTGGAGTGTCTTCCATCGCAAATCCAAGCGACTTTGGTGATGACCATTTTGAACTTATTATCATATCATTCACCAGATGAAGAGTACTTGGGAGAACTCATTGAGCCATCATGGGCTGAGAATCCAACTATAAAGGTAGCATTTGAAAGGTTCAATGGAAGATTGAAGGAAATTGAAGGTATAATAGACACAAGAAATGCTGATAGTAACTTGAAAAATAGGAATGGAGCTGGAATAATGCCTTACGAGCTAATGAAACCATTTTCAGGACCTGGAGTTACTGGAAAGGGGGTTCCATATAGCATATCTATTTAA 2508 0.3892 MATTKTHHNVKALVTVKHSDVGLIKNIVTGIFGNSNLVLELVGAQLHSNANSEKKTIKGKAHETEKKENDAEYEATFVVPADFGNVGAVLVENEHGSEIFLKNIVLDGFPDGPVHLSCQSWVQPKHDSPTKRVFFTNKMYLPSQTPSGLRKLRENELKELRGNGEGERKSSDRIYDYDVYNDLGDPDINSKLKRPVLGGNKQYPYPRRCRTGRKHSNTDPSYEKRDLNFYVPRDEAFADIKKIQFNATTVSSGVKTVLESLDTIFTDIDLGFDSFEDIDTLFKDGFQLPTSLDSNNLNLLQKVIPRFLKAANDSQKVLRFDTPEALKRDKFFWLSDEEFARETLAGANPYSIQLVKEWPIRSKLDSQIYGPPESAITREVIESQIIGYTTLEEAIREKKMFMLDYHDLYIPYVSKVRELENTTLYGSRTLFFLTKQGTLKPLVIELTRPIIGDKPQWKQIFTPASDSTNLWLWRLAKAHVLAHDTGYHELISHWLRTHCVVEPFVIATNRQLSIMHPIYKLLHPHLRYTLEINALGREILINAYGVIEDSFFTKKYSMELSAVAYDKLWQFDLQGLPNDLIYRGMAVEDPNAQHGVKLAIEDYPFANDGLLIWDAIKQWVTEYVNHHYPSPSIIESDQELQAWWTEIRTKGHGDKSEEPWWPKLKTQKDLIDIITTIAWVASAHHSATNFAQYAYGGYFPNRPTVARNKMPTEDPTKEEWEKFINKPEQTLLECLPSQIQATLVMTILNLLSYHSPDEEYLGELIEPSWAENPTIKVAFERFNGRLKEIEGIIDTRNADSNLKNRNGAGIMPYELMKPFSGPGVTGKGVPYSISI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02119 835 Gene3D - 159 258 - -
Vifa2g02119 835 Gene3D - 351 484 - -
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 132 153 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 106 124 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 748 762 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 425 449 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 204 223 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 171 187 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 269 290 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 318 334 IPR001246 GO:0016491
Vifa2g02119 835 PRINTS Plant lipoxygenase signature 357 376 IPR001246 GO:0016491
Vifa2g02119 835 ProSiteProfiles PLAT domain profile. 10 136 IPR001024 GO:0005515
Vifa2g02119 835 Pfam PLAT/LH2 domain 57 135 IPR001024 GO:0005515
Vifa2g02119 835 FunFam Lipoxygenase 141 240 - -
Vifa2g02119 835 FunFam Lipoxygenase 467 834 - -
Vifa2g02119 835 SMART LH2_4 8 137 IPR001024 GO:0005515
Vifa2g02119 835 Gene3D - 485 833 - -
Vifa2g02119 835 PRINTS Lipoxygenase signature 508 528 IPR013819 GO:0016702|GO:0046872
Vifa2g02119 835 PRINTS Lipoxygenase signature 488 505 IPR013819 GO:0016702|GO:0046872
Vifa2g02119 835 PRINTS Lipoxygenase signature 470 487 IPR013819 GO:0016702|GO:0046872
Vifa2g02119 835 ProSitePatterns Lipoxygenases iron-binding region signature 1. 488 502 IPR020833 GO:0016702|GO:0046872
Vifa2g02119 835 Gene3D - 260 349 IPR027433 -
Vifa2g02119 835 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 139 835 IPR013819 GO:0016702|GO:0046872
Vifa2g02119 835 PANTHER LIPOXYGENASE 17 835 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa2g02119 835 SUPERFAMILY Lipoxigenase 141 835 IPR036226 -
Vifa2g02119 835 ProSitePatterns Lipoxygenases iron-binding region signature 2. 515 525 IPR020834 GO:0016702|GO:0046872
Vifa2g02119 835 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 5 140 IPR036392 GO:0005515
Vifa2g02119 835 FunFam Lipoxygenase 350 484 - -
Vifa2g02119 835 Gene3D PLAT/LH2 domain 5 158 - -
Vifa2g02119 835 MobiDBLite consensus disorder prediction 203 224 - -
Vifa2g02119 835 Pfam Lipoxygenase 148 818 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02119 Vifa-Chr2 548552049 548555468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02119 79 835 Acyl Lipid Metabolism Gene Families AT3G45140 57.087 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02119 K00454 - gmx:106794093 1315.06