Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02118 ATGACGCATTTGTTGAAGAAGCCACATGTTAATAGATCATTCATCATTAACCATGCATCTTCTACTTCCTATATATGGAAGAAAGATGTTTGTCACAACAATAGCAACTTGTTCTTGAAATCTTCTCCACCTAAAAAGGTTTGTTTGAGGAGGAGTTTGTCTCATCCCAAGTTCTTGAGAGTTGTGATGGCAACAAGTAAAACTCATAATGTGAAAGCCATAGTGAGTGTGAAACAAAGTGTTGGTGGTGTTATTAAGAATCTTGTTAGTGGTATTGTTGGGAACAATCACTTGGTGTTGGAGCTTGTCAGTGCTGACCTTAATCCAAATGCGAACTCGGAGAAAAAGACGATAAAAGGAAAAGCACACGAGACTGAGAAAAAAGAGAATGATGCAGAATATGAAGCAACTTTTGTGGTACCAGCAGATTTTGGAAATGTTGGTGCTGTTTTGGTTGAAAATGAACACGGCAGTGAGATATTTCTAAAGAATATAGTCCTTGATGGTTTCCCTGATGGTCCGGTTCACCTTTCGTGTCAATCATGGGTTCAACCAAAGCATGATTCTCCTACTAAGAGAGTTTTCTTCACTAACAAGATGTATTTGCCATCACAAACACCAAGTGGATTAAGAAAGCTGAGAGAAAATGAGCTGAAAGAATTAAGAGGGAATGGTGAAGGTGAAAGAAAAAGCTCAGACAGAATCTATGATTATGATGTGTACAATGATCTTGGTGATCCTGATATCAACAGTAAACTCAAAAGGCCTGTTCTTGGTGGCAACAAACAGTATCCATATCCTAGACGCTGTCGTACCGGTCGAAAGCATTCCAATACAGATCCATCATATGAAAAGAGAGATTTGAATTTCTATGTTCCTCGCGACGAGGCATTTGCTGACATAAAGAAGATACAATTCAACGCAACTACAGTTTCGTCAGGAGTAAAAACAGTTTTGGAATCTTTAGATACAATTTTCACTGATATAGATCTTGGATTTGATAGTTTTGAAGACATAGACACACTTTTCAAAGATGGATTTCAGTTACCTACATCTCTTGATTCCAATAACTTAAACTTGCTCCAAAAAGTCATTCCTAGGTTTCTTAAGGCTGCAAATGATAGCCAAAAGGTTTTGCGCTTCGATACACCAGAAGCACTTAAAAGAGACAAATTCTTTTGGCTATCAGACGAGGAATTTGCAAGGGAGACATTGGCAGGGGCCAATCCATATAGCATCCAATTAGTCAAGGAATGGCCTATAAGAAGTAAATTAGATTCCCAAATTTACGGTCCACCAGAATCAGCAATCACTAGAGAAGTCATTGAGTCGCAGATAATTGGTTATACCACACTTGAAGAGGCCATTCGAGAGAAGAAAATGTTCATGCTAGACTACCATGATTTATATATACCATATGTAAGCAAAGTGAGGGAATTGGAGAATACTACACTGTATGGATCAAGAACATTGTTCTTCCTCACCAAACAAGGCACATTAAAGCCACTTGTTATTGAGCTTACTAGACCGATCATCGGTGACAAACCTCAATGGAAACAAATTTTCACACCTGCTTCTGATTCGACAAATCTTTGGCTTTGGCGGCTTGCAAAAGCTCATGTTCTTGCTCATGATACTGGTTACCATGAACTTATAAGCCACTGGTTAAGGACTCATTGTGTTGTAGAACCCTTTGTCATTGCAACAAATAGACAGCTTAGCATCATGCATCCAATCTACAAGTTACTACATCCACATCTCAGATATACTTTGGAGATAAATGCACTCGGTCGTGAGATTCTTATTAATGCTTACGGAGTCATTGAAGACTCATTCTTTACTAAAAAGTATTCAATGGAATTATCGGCTGTGGCATATGATAAGCTTTGGCAGTTTGATTTGCAGGGACTACCAAATGATCTTATTTATAGAGGAATGGCTGTGGAAGACCCTAATGCACAACATGGAGTAAAGCTAGCAATTGAAGACTACCCTTTTGCGAATGACGGTCTTCTCATATGGGATGCTATAAAACAATGGGTCACAGAATATGTCAATCATCACTATCCAAGTCCAAGCATCATAGAATCTGATCAAGAGCTTCAAGCATGGTGGACAGAAATTCGAACAAAGGGTCACGGAGACAAATCAGAAGAACCATGGTGGCCAAAACTCAAAACACAGAAAGACCTTATTGATATCATTACCACCATAGCTTGGGTAGCATCTGCTCATCATTCAGCTACAAACTTTGCACAATATGCTTACGGAGGCTATTTTCCTAACAGACCAACGGTCGCTAGAAACAAAATGCCAACAGAAGACCCTACAAAGGAAGAATGGGAAAAATTCATCAACAAACCCGAGCAAACACTTTTGGAGTGTCTTCCATCGCAAATCCAAGCGACTTTGGTGATGACCATTTTGAACTTATTATCATATCATTCACCAGATGAAGAGTACTTGGGAGAACTCATTGAGCCATCATGGGCTGAGAATCCAACTATAAAGGTAGCATTTGAAAGGTTCAATGGAAGATTGAAGGAAATTGAAGGTATAATAGACACAAGAAATGCTGATAGTAACTTGAAAAATAGGAATGGAGCTGGAATAATGCCTTACGAGCTAATGAAACCATTTTCAGGACCTGGAGTTACTGGAAAGGGGGTTCCATATAGCATATCTATTTAA 2691 0.3887 MTHLLKKPHVNRSFIINHASSTSYIWKKDVCHNNSNLFLKSSPPKKVCLRRSLSHPKFLRVVMATSKTHNVKAIVSVKQSVGGVIKNLVSGIVGNNHLVLELVSADLNPNANSEKKTIKGKAHETEKKENDAEYEATFVVPADFGNVGAVLVENEHGSEIFLKNIVLDGFPDGPVHLSCQSWVQPKHDSPTKRVFFTNKMYLPSQTPSGLRKLRENELKELRGNGEGERKSSDRIYDYDVYNDLGDPDINSKLKRPVLGGNKQYPYPRRCRTGRKHSNTDPSYEKRDLNFYVPRDEAFADIKKIQFNATTVSSGVKTVLESLDTIFTDIDLGFDSFEDIDTLFKDGFQLPTSLDSNNLNLLQKVIPRFLKAANDSQKVLRFDTPEALKRDKFFWLSDEEFARETLAGANPYSIQLVKEWPIRSKLDSQIYGPPESAITREVIESQIIGYTTLEEAIREKKMFMLDYHDLYIPYVSKVRELENTTLYGSRTLFFLTKQGTLKPLVIELTRPIIGDKPQWKQIFTPASDSTNLWLWRLAKAHVLAHDTGYHELISHWLRTHCVVEPFVIATNRQLSIMHPIYKLLHPHLRYTLEINALGREILINAYGVIEDSFFTKKYSMELSAVAYDKLWQFDLQGLPNDLIYRGMAVEDPNAQHGVKLAIEDYPFANDGLLIWDAIKQWVTEYVNHHYPSPSIIESDQELQAWWTEIRTKGHGDKSEEPWWPKLKTQKDLIDIITTIAWVASAHHSATNFAQYAYGGYFPNRPTVARNKMPTEDPTKEEWEKFINKPEQTLLECLPSQIQATLVMTILNLLSYHSPDEEYLGELIEPSWAENPTIKVAFERFNGRLKEIEGIIDTRNADSNLKNRNGAGIMPYELMKPFSGPGVTGKGVPYSISI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02118 896 Gene3D - 546 894 - -
Vifa2g02118 896 FunFam Lipoxygenase 528 895 - -
Vifa2g02118 896 Gene3D - 220 319 - -
Vifa2g02118 896 PRINTS Lipoxygenase signature 531 548 IPR013819 GO:0016702|GO:0046872
Vifa2g02118 896 PRINTS Lipoxygenase signature 569 589 IPR013819 GO:0016702|GO:0046872
Vifa2g02118 896 PRINTS Lipoxygenase signature 549 566 IPR013819 GO:0016702|GO:0046872
Vifa2g02118 896 Gene3D - 412 545 - -
Vifa2g02118 896 ProSiteProfiles PLAT domain profile. 73 197 IPR001024 GO:0005515
Vifa2g02118 896 SMART LH2_4 69 198 IPR001024 GO:0005515
Vifa2g02118 896 ProSitePatterns Lipoxygenases iron-binding region signature 2. 576 586 IPR020834 GO:0016702|GO:0046872
Vifa2g02118 896 Gene3D - 321 410 IPR027433 -
Vifa2g02118 896 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 65 201 IPR036392 GO:0005515
Vifa2g02118 896 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 200 896 IPR013819 GO:0016702|GO:0046872
Vifa2g02118 896 MobiDBLite consensus disorder prediction 264 285 - -
Vifa2g02118 896 Pfam Lipoxygenase 209 879 IPR013819 GO:0016702|GO:0046872
Vifa2g02118 896 Pfam PLAT/LH2 domain 115 196 IPR001024 GO:0005515
Vifa2g02118 896 Gene3D PLAT/LH2 domain 60 219 - -
Vifa2g02118 896 MobiDBLite consensus disorder prediction 116 130 - -
Vifa2g02118 896 PANTHER LIPOXYGENASE 71 896 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa2g02118 896 ProSitePatterns Lipoxygenases iron-binding region signature 1. 549 563 IPR020833 GO:0016702|GO:0046872
Vifa2g02118 896 MobiDBLite consensus disorder prediction 111 130 - -
Vifa2g02118 896 SUPERFAMILY Lipoxigenase 202 896 IPR036226 -
Vifa2g02118 896 FunFam Lipoxygenase 411 545 - -
Vifa2g02118 896 FunFam Lipoxygenase 202 301 - -
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 167 185 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 809 823 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 193 214 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 232 248 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 379 395 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 265 284 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 418 437 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 330 351 IPR001246 GO:0016491
Vifa2g02118 896 PRINTS Plant lipoxygenase signature 486 510 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02118 Vifa-Chr2 548550561 548555468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02118 140 896 Acyl Lipid Metabolism Gene Families AT3G45140 57.087 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02118 K00454 - gmx:100782277 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02118 2 548550561 548555468 Vifa2g02118 2 548550561 548555468 ECH