Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g02065 | ATGAAAATCATGGACTATCACTATGACACTCCCTCTTCCTCATCAAACTCCAACCACTTCCTCCAACTTGCAGGGTCAACATCCCTCTCTTCACAACGCAGCCTCCTCTCAGTTCCTTCCCTCAACACTCACAACAATCACCATCACCACCATCACCACCATCACACTTCCCACCTCATCACAACCCTCAAATCCCATAACACATCATCCTACATATCCTCTCTCACCCTCTTCGGAAAATTCCTCCTCACTGGTTCATCCGACAGAGAAATCACAACCTGGAATATAACTACCTCGGAAGAACAAAACTCAACAAACAAAGTAGTCGCAGGAAATGGCGCTGTTAAATCCTTAGTAATTCAATCAAACACAAACTCAAACACCCTTTTCAGTGCTCATCAAGACCACAAAATCCGAGTTTGGAAACTAACCAACGACCAAAAATACACCCATTTAGCAACACTTCCAACACTCGGTGACCGTGCTTCCAAGATTTTAATCCCGAAAAACCATGTCCAAATCCGAAGACACAAAAAATGCACGTGGGTTCATCACGTCGACACTGTTTCTTCACTTGCTCTGTCTAAAGATGGAAACTTGCTCTACTCTGTTTCATGGGACAGAACAATCAAAATCTGGCGAACCAGAGACTTCACTTGCTTGGAATCAATAACAAACGCACACGACGATGCTATAAACGCGGTTGTTGTTTCTTACGACGGTGTTGTATACAGTGGATCGGCTGATAAGAGAATTAAAGTATGGAAGAATCTTCAACATGATAAGAAACAGAAACACTGTTTGGTTGATACCTTGGAGAAACACAACTCTGGAATCAATGCTTTAGTTTTGAGCAGTGATGAATCTGTTCTGTATTCCGGTGCCTGCGATAGATCAATACTGGTTTGGGAGAAAGAAGATACTGATGATGAAGATGATGATGGAAAAATGGTGGTGGTGGGTGCGTTAAGGGGACACACAAACTCTATACTATGTTTAGCTGTTGTTTGGGATTTATTGTGCAGTGGTTCAGCTGACAAAACCATAAGAATTTGGAGAGGTGTTGGTAGAGATTATTGTTGTTTGTCTGTTTTACAAGGACATCAAGGTTCAATTAAGTGCTTAACTGCAGTGGTTGAAAACTGTGATGATAATTCAGAATCTGAAGAAGCACCTTTTCTAGTTTATAGTAGTAGTTTAGACTGTGACATTAAGGTCTGGCAGATTTTTGTTCCTGCTATGTAA | 1245 | 0.4145 | MKIMDYHYDTPSSSSNSNHFLQLAGSTSLSSQRSLLSVPSLNTHNNHHHHHHHHHTSHLITTLKSHNTSSYISSLTLFGKFLLTGSSDREITTWNITTSEEQNSTNKVVAGNGAVKSLVIQSNTNSNTLFSAHQDHKIRVWKLTNDQKYTHLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGNLLYSVSWDRTIKIWRTRDFTCLESITNAHDDAINAVVVSYDGVVYSGSADKRIKVWKNLQHDKKQKHCLVDTLEKHNSGINALVLSSDESVLYSGACDRSILVWEKEDTDDEDDDGKMVVVGALRGHTNSILCLAVVWDLLCSGSADKTIRIWRGVGRDYCCLSVLQGHQGSIKCLTAVVENCDDNSESEEAPFLVYSSSLDCDIKVWQIFVPAM | 414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 272 | 304 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | FunFam | BnaA09g28200D protein | 172 | 260 | - | - | |
| Vifa2g02065 | 414 | PRINTS | G protein beta WD-40 repeat signature | 201 | 215 | IPR020472 | - | |
| Vifa2g02065 | 414 | PRINTS | G protein beta WD-40 repeat signature | 340 | 354 | IPR020472 | - | |
| Vifa2g02065 | 414 | PRINTS | G protein beta WD-40 repeat signature | 82 | 96 | IPR020472 | - | |
| Vifa2g02065 | 414 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 82 | 96 | IPR019775 | - | |
| Vifa2g02065 | 414 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 14 | 409 | IPR045182 | - | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 182 | 213 | - | - | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 323 | 352 | - | - | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 225 | 256 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 63 | 104 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 323 | 352 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SUPERFAMILY | WD40 repeat-like | 56 | 408 | IPR036322 | GO:0005515 | |
| Vifa2g02065 | 414 | Gene3D | - | 262 | 412 | IPR015943 | GO:0005515 | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 182 | 223 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | CDD | WD40 | 60 | 408 | - | - | |
| Vifa2g02065 | 414 | Gene3D | - | 42 | 171 | IPR015943 | GO:0005515 | |
| Vifa2g02065 | 414 | Pfam | WD domain, G-beta repeat | 360 | 407 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | Pfam | WD domain, G-beta repeat | 183 | 213 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | Pfam | WD domain, G-beta repeat | 321 | 352 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | Pfam | WD domain, G-beta repeat | 220 | 256 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | Pfam | WD domain, G-beta repeat | 269 | 303 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 272 | 304 | - | - | |
| Vifa2g02065 | 414 | Gene3D | - | 172 | 261 | IPR015943 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 217 | 256 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 358 | 408 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 56 | 95 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 316 | 353 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 175 | 214 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 101 | 142 | IPR001680 | GO:0005515 | |
| Vifa2g02065 | 414 | SMART | WD40_4 | 265 | 304 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g02065 | Vifa-Chr2 | 536527054 | 536528298 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02065 | 125 | 408 | Acyl Lipid Metabolism Gene Families | AT3G18860 | 26.389 | 9.54e-10 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g02065 | - | - | gmx:100777242 | 522.702 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa2g02065 | 2 | 536527054 | 536528298 | Vifa2g02065 | 2 | 536527054 | 536528298 | ECH | |
| Vifa2g02065 | 2 | 536527054 | 536528298 | Vifa2g02065 | 2 | 536527054 | 536528298 | PCT |