Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02039 ATGCCGGGAATTGTTACAAATGGGGTTCATGATGAAGGGGGGACTAATGAGATGAATGAGAGTCATTCCCCAGCTAAGGAAACTGTATATCTGATTAAGTCTCCGAGCGGGCGTCGCAATTCTCGAGTTGAGGATGGGGTGGTTGAGCCGTCGATCCAGCAGCTTTATGATAATGTGTGTGATATGCAGAGTTCTGATCGGTCTCCGTCCCGGCAAAGTTATGGATCTGATGGGGATGAGTCTAGGATTGATTCAGAACTGCATCATTTGGTTGGAGGACGGATGAGGGAATTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGGTGGAAAGAAGGCCAGGAGAGAGTTCTAGTTGTGAAACATCTTCTGGGATTGGTGGTTTATCGAATGATAGGAAGTTGGATAAGGTGGCTGAGATTCGGACTGGGAGCAAAAGTCCGGTTTCCTCAGAAAAATCTGTCAAAGCATTGAATTCTTCATCGCCGGGCTTTGACATTTCACCAATATCTAAACCCAAAGGAAAAAGTCCTTCTGCAAAACCTCCTTTGGAGAGAAAGAATGATAAGCCTTTGAAAAAACAAACTAGAGGAGTTAATGGCGCGAAGAGTTCAAAGAATTCTCCTTTGGGAAAGTCGGTGCTACAGAGTCGTGTTGAGAATTCGGCCGAATCAGAATTAGATAGACCAGAGCGGGCACCTGGATTACTAAAGCAAGCAAGAGATCTTATTTCATCAGGAGATAATCCACACAAAGCTCTTGAACTAGCTCTTCAAGCAATGAAACTTTTTGAGAAGTTCGGTAATGGGAAACCGAATTTGGAACTGGTCATGTGTTTACATGTTACAGCGGCAATATATTGCAGCTTGGGTCAGTACAGTGAGGCGATTCCAATTCTTGAGCGTTCAATTGAAATTCCTGTTAGTGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGATACCTATGCTATGTTAGGCCAGCTTGAGAATTCAATTATGTGCTACACTGCTGGGTTTGAAGTCCAGAGGGAGATTTTGGGAGAGACAGACCCGAGAGTTGGCGAAACTTGTCGGTATCTTGCTGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGACACTATGTCAAATGGCTCTTGACATTCATAGAGCAAATAGTTCAGCACCATCTATTGAAGAAGCAGCTGATAGGAGGCTCATGGGTCTTATATGTGAAACGAAGGGGAATCATGAAGCAGCTCTTGAACACCTTGTTTTAGCTAGCATGGCAATGGTAGCAAATGGCCAGGAAGTGGAAGTGGCATCTGTTGACTGTAGCATCGGAGACGCATACTTATCTTTGTCTCGATTTGATGAAGCTGTTTTTGCGTATGAAAAAGCGTTAGCTGTTTTAAAGACCAACAAAGGAGAGAATCATCCAGCAGTAGGATCAGTCTTTGTCCGCTTGGCCGATTTGTATAACAGGACTGGTAAGATAAGGGAATCAAAATCGTATTGCGAGAGTGCACTTAAAATATATGAGAATCCAATGTCTGGAGTTACTCCAGAAGAGATTGCTAGCGGTCTTACAAATCTGTCAAGTATCTACGAGTCAATGAATGAGGTTGAATGGGCACTCAAGTTACTGCAGAAAGCATTGGAGATATATAATGATGCTCCTGGTCAGCAAGGCGCAATAGCAGGAATCGAAGCTCAGATTGGGGTCATGAACTACATGTTGGGAAACTATACTGAATCTTACAACACTTTGAAAAGTGCTATTTCAAAGCTTCGTGCTATTGGAGAGAAGAAATCATCCTTTTTTGGTATAGCTCTTAATCAACTGGGACTCGCATGTGTGCAGCGCTATGCCTTAAGTGAGGCTATAGAATTATTTGAGGAAGCAAAGAGTATTTTGGAACAAGAGTTGGGTCCTTATCACCCTGAAACACTTGGAGTATGTAGTAATCTTGCAGGCACATATGATGCAATTGGAAGGCTCGATGATGCAATTCAAATTCTGGAGCATGTTGTTAGTATGAGGGAAGAAAAGCTTGGTACAGCAAATCCCGACGTGGATGATGAGAAGAGAAGGTTGAGCGAGTTGTTGAAGGAAGCCGGTAGAGTTCGGAACAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGCAATGCTCGCACTTTAAACAACCTTGTCATTAACGCCTGA 2214 0.4345 MPGIVTNGVHDEGGTNEMNESHSPAKETVYLIKSPSGRRNSRVEDGVVEPSIQQLYDNVCDMQSSDRSPSRQSYGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVERRPGESSSCETSSGIGGLSNDRKLDKVAEIRTGSKSPVSSEKSVKALNSSSPGFDISPISKPKGKSPSAKPPLERKNDKPLKKQTRGVNGAKSSKNSPLGKSVLQSRVENSAESELDRPERAPGLLKQARDLISSGDNPHKALELALQAMKLFEKFGNGKPNLELVMCLHVTAAIYCSLGQYSEAIPILERSIEIPVSGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTAGFEVQREILGETDPRVGETCRYLAEANVQALQFNEAETLCQMALDIHRANSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEVEVASVDCSIGDAYLSLSRFDEAVFAYEKALAVLKTNKGENHPAVGSVFVRLADLYNRTGKIRESKSYCESALKIYENPMSGVTPEEIASGLTNLSSIYESMNEVEWALKLLQKALEIYNDAPGQQGAIAGIEAQIGVMNYMLGNYTESYNTLKSAISKLRAIGEKKSSFFGIALNQLGLACVQRYALSEAIELFEEAKSILEQELGPYHPETLGVCSNLAGTYDAIGRLDDAIQILEHVVSMREEKLGTANPDVDDEKRRLSELLKEAGRVRNRKVRSLENLFDGNARTLNNLVINA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02039 737 Pfam Tetratricopeptide repeat 612 685 - -
Vifa2g02039 737 SMART tpr_5 611 644 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 361 394 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 528 561 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 653 686 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 319 352 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 443 476 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 569 602 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 485 518 IPR019734 GO:0005515
Vifa2g02039 737 SMART tpr_5 276 309 IPR019734 GO:0005515
Vifa2g02039 737 SUPERFAMILY TPR-like 357 682 IPR011990 GO:0005515
Vifa2g02039 737 MobiDBLite consensus disorder prediction 58 85 - -
Vifa2g02039 737 SUPERFAMILY TPR-like 232 395 IPR011990 GO:0005515
Vifa2g02039 737 MobiDBLite consensus disorder prediction 197 220 - -
Vifa2g02039 737 MobiDBLite consensus disorder prediction 178 195 - -
Vifa2g02039 737 MobiDBLite consensus disorder prediction 106 233 - -
Vifa2g02039 737 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 35 727 - -
Vifa2g02039 737 MobiDBLite consensus disorder prediction 58 76 - -
Vifa2g02039 737 Gene3D Tetratricopeptide repeat domain 222 320 IPR011990 GO:0005515
Vifa2g02039 737 Gene3D Tetratricopeptide repeat domain 321 429 IPR011990 GO:0005515
Vifa2g02039 737 Coils Coil 694 714 - -
Vifa2g02039 737 Gene3D Tetratricopeptide repeat domain 611 733 IPR011990 GO:0005515
Vifa2g02039 737 ProSiteProfiles TPR repeat profile. 528 561 IPR019734 GO:0005515
Vifa2g02039 737 Gene3D Tetratricopeptide repeat domain 430 610 IPR011990 GO:0005515
Vifa2g02039 737 MobiDBLite consensus disorder prediction 143 166 - -
Vifa2g02039 737 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
Vifa2g02039 737 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g02039 737 Pfam Tetratricopeptide repeat 283 307 IPR019734 GO:0005515
Vifa2g02039 737 Pfam MalT-like TPR region 374 562 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02039 Vifa-Chr2 531025433 531028161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02039 - - gmx:100791625 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02039 2 531025433 531028161 Vifa2g02039 2 531025433 531028161 ECH
Vifa2g02039 2 531025433 531028161 Vifa2g02039 2 531025433 531028161 PCT