Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02035 ATGAAGAACTGCATTGAAGAAGCAAAGCTTTTTCGCGCTCAAGGTCAAAATGAGATGGCTATCAACCTTGGAATGTACATATCTCAAAATTATCAAAGTAATGAAGGGGCTTCAGATTTATATCGGTTGATTGGGAAGTGGCTGGCAGAGACCAGATCTAGCAACTCAAGAACAATTTTGGAGAAGTATTTGAAACCTGCAGTCTCTATAACCGAGGATGTGAAAACTGCGGATAAAAAGGCCATGGGACGGAGATGTCAGACTCATTTTCATCTTGCACATTATACTGATGCTCTATTTAGGAGCCATGAAGAAAGACTTAACTCTAATGAGTGGCAATCAGCAATGCGCTTAAGAAAGCATAAGACTGTAGAGTTGGAAGCACTCATTAAAAGGTTAAGGAGTTCAACAAAGGGGGAGAAAACGGACTACACCATGAAAATCCAAGAACTACAAAAGCAAGTAGCCATGGATAAGGAAGAAGAAAAAAAATTACAGGATGACCGGGACAATTTTCTTAATCTGGCATTGGAGGGATATAAACATTGTTTAGTCATAGGTGACAAGTATGATGTCCGAGTGGTGTTTCGAATTGTTTCCTTGTGGTTCAATCTTTCTTCTAGAAAACATGTTGTAAATAGCATGCTTAGCACAATTGACGAGGTTCAATCCTTCAAATTTATACCGTTAGTATACCAAATTGCTTCTAGAATGGGTAGCTCCAAGGATGGTCAAGGACCTCTTAATTTCCAGTTTGCTTTGGGTTCTCTTGTGAAGAAAATGGCTATTGATCATCCATACCATACAGTACTTCAACTTCTGGCCCTGGCAAATGGTGACCGTATCAAGGATAAACAGCGTAGTAGAAGTTCATTTGTGGTTGATATGGACAAGAAACATGCGGCAGAAAACCTGCTAAATGAGTTGTCATCTTATCATGGAGCAATCATACGACAAATGAAGCAAATGGTAGATATTTATATCAAACTTGCTGAGATGGAGACAAAGAGAGAGGATACCAATAAAAGAGTGACACTACCAAGGGATTTACGTAATCTCCCAGTGCTAGAACTTGTACCTGTAGTGACAGCTACCATTTCAATTGATTGTAGTTGTCAATATCACGAAGGCTCTTTTCCTTACTTCAAAGGATTAGGAGATTCTGTTATGATAATGAATGGTATAAATGCTCCTAAAGTGGTTGAATGCTTGGGTTCTGATGGCTGCAGATATCGGCAACTTGCAAAATCTGGAAATGATGACTTAAGACAGGACGCTGTAATGGAACAGTTCTTTGGTTTAGTTAACACATTCCTAAGGAACCATCAAGATACATGGAGAAGAAGGCTAGGTGTTCGGACTTACAAGGTTGTTCCTTTTACTCCAAGTGCTGGTGTTCTTGAATGGGTTAATGGAACTCTTCCTCTCGGTGAATACCTTATAGGGAGCATGAGAAATGGTGGTGCGCATGGTCGCTATGGAATAGGGGATTGGCCGTTCTTTAAATGTCGAGAGCACATGGCAAATGAAAGGGACAAGCGCAAAGCATTTCAGGAAGTTTGCAGGAGTTTCAGGCCCGTCATGCATTTCTTTTTCTTGGAGAGGTTTTTACACCCAGCTGAGTGGTTTGAAAAGAGACTGGCATATACCCGAAGTGTTGCTACCAGTTCTATGGTTGGTTATATTGTTGGCCTTGGAGATCGGCATTCAATGAACATTTTAATTGATCAGACTACTGCAGAGGTTGTTCACATTGATCTTGGTGTTGCATTCGAACAAGGCTTGATGCTTAAGACCCCAGAACGGGTTCCATATAGGCTCACAAGAGATGTAATTGATGGAATGGGTGTAACTGGTGTAGAGGGGGTTTTCAGAAGATGTTGTGAGAAAACACTTTCTGTTATGCGGACAAACAAAGAGGCATTACTTACAATTGTGGAGGTGTTTATCCATGATCCTCTTTATAAGTGGGCTTTATCTCCTCTGAAAGCTTTGCAGCGTCAAAAGGAAATGGATGTTGATTTGGATACAAGTTTGGAGGAACCTCAAAACGAGTATGAAGGAAATAAAGATGCAGCACGTGCACTTTTGCGTGTAAAGCAAAAACTGGATGGGTATGAAGATGGTGAAATGCGAAGTATCCACGGGCAGGTACAGCAACTCATCCAAGATGCAATAGATTCTGAGCGATTGTGCCAAATGTTTCCTGGTTGGGGAGCTTGGTTATGA 2229 0.4092 MKNCIEEAKLFRAQGQNEMAINLGMYISQNYQSNEGASDLYRLIGKWLAETRSSNSRTILEKYLKPAVSITEDVKTADKKAMGRRCQTHFHLAHYTDALFRSHEERLNSNEWQSAMRLRKHKTVELEALIKRLRSSTKGEKTDYTMKIQELQKQVAMDKEEEKKLQDDRDNFLNLALEGYKHCLVIGDKYDVRVVFRIVSLWFNLSSRKHVVNSMLSTIDEVQSFKFIPLVYQIASRMGSSKDGQGPLNFQFALGSLVKKMAIDHPYHTVLQLLALANGDRIKDKQRSRSSFVVDMDKKHAAENLLNELSSYHGAIIRQMKQMVDIYIKLAEMETKREDTNKRVTLPRDLRNLPVLELVPVVTATISIDCSCQYHEGSFPYFKGLGDSVMIMNGINAPKVVECLGSDGCRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHQDTWRRRLGVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGIGDWPFFKCREHMANERDKRKAFQEVCRSFRPVMHFFFLERFLHPAEWFEKRLAYTRSVATSSMVGYIVGLGDRHSMNILIDQTTAEVVHIDLGVAFEQGLMLKTPERVPYRLTRDVIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDVDLDTSLEEPQNEYEGNKDAARALLRVKQKLDGYEDGEMRSIHGQVQQLIQDAIDSERLCQMFPGWGAWL 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02035 742 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 385 698 IPR000403 -
Vifa2g02035 742 CDD PIKKc_ATM 382 659 IPR044107 GO:0004674|GO:0006281|GO:0006974
Vifa2g02035 742 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 415 430 IPR018936 GO:0016301
Vifa2g02035 742 SMART pi3k_hr1_6 412 706 IPR000403 -
Vifa2g02035 742 SMART FATC_2 710 742 IPR003152 GO:0005515
Vifa2g02035 742 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 552 572 IPR018936 GO:0016301
Vifa2g02035 742 FunFam Serine/threonine-protein kinase ATM 516 706 - -
Vifa2g02035 742 SUPERFAMILY Protein kinase-like (PK-like) 317 671 IPR011009 -
Vifa2g02035 742 Gene3D - 309 470 - -
Vifa2g02035 742 ProSiteProfiles FATC domain profile. 710 742 IPR003152 GO:0005515
Vifa2g02035 742 Gene3D - 517 727 IPR036940 -
Vifa2g02035 742 FunFam Serine/threonine-protein kinase ATM 311 470 - -
Vifa2g02035 742 Pfam FATC domain 713 742 IPR003152 GO:0005515
Vifa2g02035 742 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 5 742 IPR038980 GO:0004674|GO:0006974
Vifa2g02035 742 Coils Coil 141 168 - -
Vifa2g02035 742 Pfam Phosphatidylinositol 3- and 4-kinase 418 658 IPR000403 -
Vifa2g02035 742 ProSiteProfiles FAT domain profile. 1 279 IPR014009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02035 Vifa-Chr2 529336614 529351541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02035 531 668 Lipid Metabolism Gene Families AT5G09350 24.324 1.16e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02035 K04728 - gmx:100788458 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02035 2 529336614 529351541 Vifa2g02035 2 529336614 529351541 ECH