Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01999 ATGAAGGCAACATTGAGATACTTAGCAGGAATTGCAGGGCCAAGTGGTTTTGGCTCAAACTCAACTGCTGAACATGTTACTCAAAACTGCTCTCAGTTTCTTCCTTCCAATATAACTGCTCTCATCACTGGTGGCACTTCTGGTATTGGAGCAGAAACAGCTAGAGTGTTAGCAAAAAGAGGAGTGAGAGTTGTGATAGGTGCAAGGGATTTGAGGAAAGGAAGAGAAGTGAGAGAGAATATTCAAAAAGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTTCTGAGTTTTTAACTTTAAATCTTCCACTTAATATTCTAATAAACAATGCTGGCATATTCTCTCAAGATTTGGAGTTCTCTGAAGAAAAAGTTGAGATCACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACAGAAATCTTACTAGACAAAATGATTGAAACCGCGGAAAAAATAAGTTTTGAAGGAAGAATAATAAACGTTTCGTCTGTCATACATAGCTGGGTGAAGAGAAATGGGTTTTGTTTCACACACATACTCAATGGAAAAAACTATAATGGAACACGAGCTTATGCTCAATCGAAATTGGCGAATATTTTGCATGCTAAAGAAATAGCCAGACAACTCAAGGCAAGGAATGCAAGAGTAACTATGAATGCAGTTCATCCTGGTATTGTGAAGACAAGAATTATTAACAAGGGCTTAATAACAGATTCCTTATTTTTCATTGCATCAAAGTTACTCAAATCTACATCACAGGGTGCATCAACAACATGTTATGTGGCTTTGAGTCCAAAAACAGAAGGAGTGAGTGGAAAATACTTTACAGATTGTAATGAGACTAAGTGTTCTGGCTTAGCAAATGATGAATTAGAAGCTCAGAAGTTATGGAACAACACTCATGCCTTGCTTCAAAAACGACTGCATCTAGCAGCAATTTGA 987 0.3668 MKATLRYLAGIAGPSGFGSNSTAEHVTQNCSQFLPSNITALITGGTSGIGAETARVLAKRGVRVVIGARDLRKGREVRENIQKESPNAEVILLEIDLSSFCSVQRFCSEFLTLNLPLNILINNAGIFSQDLEFSEEKVEITFATNYLGHFLLTEILLDKMIETAEKISFEGRIINVSSVIHSWVKRNGFCFTHILNGKNYNGTRAYAQSKLANILHAKEIARQLKARNARVTMNAVHPGIVKTRIINKGLITDSLFFIASKLLKSTSQGASTTCYVALSPKTEGVSGKYFTDCNETKCSGLANDELEAQKLWNNTHALLQKRLHLAAI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01999 328 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Vifa2g01999 328 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Vifa2g01999 328 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Vifa2g01999 328 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vifa2g01999 328 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vifa2g01999 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 297 IPR036291 -
Vifa2g01999 328 CDD retinol-DH_like_SDR_c_like 39 312 - -
Vifa2g01999 328 Gene3D - 35 324 - -
Vifa2g01999 328 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vifa2g01999 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vifa2g01999 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Vifa2g01999 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Vifa2g01999 328 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01999 Vifa-Chr2 519893491 519895145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01999 41 245 Acyl Lipid Metabolism Gene Families AT1G63380 29.245 1.05e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01999 - - gmx:100801384 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01999 2 519893491 519895145 Vifa2g01999 2 519893491 519895145 ECH
Vifa2g01999 2 519893491 519895145 Vifa2g01999 2 519893491 519895145 PCT