Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01993 ATGGCACCACCAAGCATAACCAAAACTGCAACCCTCCAAGACGTAATAAGCACCATCGATATTGGTAATGGTAACTCACCCTTATTCTCCATAACCTTAGACCAATCACGTAACTTCCTTGCAAATGGCCACCCTTTCCTCACCCAAGTCCCACCTAACATAACAACAACAACAACAACCACTGCTTCCTCTTTTCTCAATCTCAAATCCAACAAAGATACCATTCCCAACAACAACAACACCATGTTGTTGCAACAAGGTTGTTTCGTTGGTTTCAACTCCACCGAACCCAAAAGCCATCACGTAGTTCCACTCGGCAAACTAAAAGGAATCAAATTCATGAGCATATTCCGGTTCAAAGTTTGGTGGACAACTCACTGGGTCGGAACAAACGGACAGGAACTACAACACGAAACACAAATGTTAATCCTGGACAAAAACGACTCCCTCGGACGACCCTATGTCTTACTCCTCCCAATCCTAGAAAACACCTTCCGAACCTCACTCCAACCCTGTCTCAACGATCACATAGGCATGTCCGTCGAAAGCGGTTCAACACATGTCACCGAGTCAACCTTCAAAGCATGTCTTTACATCCATCTCAGTAACGACCCATACAGTTTACTAAAAGAAGCAGTTAAAGTAATCCAAACTCAGTTAGGAACATTCAAGACTCTTGAAGAAAAAACAGCACCTAGTATTATAGACAAATTCGGTTGGTGCACGTGGGATGCTTTTTACTTGAAGGTTCATCCAAAAGGTGTATGGGAAGGTGTAAAGTCTCTCACAGACGGTGGTTGTCCTCCCGGTTTCGTCATAATCGACGACGGTTGGCAATCCATTTGTCATGACGATGACGATGAAGATGATTCAGGAATGAACCGAACCTCAGCCGGGGAACAAATGCCATGCAGACTTGTAAAATACGAAGAGAATTCAAAATTTAGAGAATATGAGAATCCTGAAAATGGAGGGAAGAAAGGTTTGGGTGGTTTTGTGAGGGATTTGAAGGAAGAGTTTGGGAGTGTGGAGAGTGTTTATGTTTGGCATGCGCTTTGTGGGTATTGGGGCGGGGTTAGGCCTGGAGTGTATGGGATGCCGAAAGCTAGGGTTGTTGTTCCGAAGGTGTCTCAGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTTGAGAACGGTGTGGGGCTAGTGCCGCCAGATTTTGCACATGAGATGTTTGATGGGCTTCACTCTCATTTGGAGTCGGCGGGAATTGACGGTGTTAAAGTTGATGTTATCCATCTGCTTGAGTTACTATCAGAGGAATATGGTGGACGAGTTGAGCTAGCAAGAGCTTATTACAAAGCACTAACCTCATCAGTGAAGAAACATTTCAAAGGCAATGGTGTAATTGCTAGCATGGAGCATTGCAACGACTTCTTTCTCCTCGGCACCGAAGCCATATCCCTCGGACGCGTCGGAGATGATTTTTGGTGCTCTGATCCATCTGGTGATCCAAATGGTACATATTGGCTCCAAGGTTGTCACATGGTACATTGTGCCTACAACAGTTTATGGATGGGAAATTTCATTCAGCCAGATTGGGACATGTTTCAGTCCACTCATCCTTGTGCCGAATTTCATGCCGCCTCAAGAGCCATATCCGGCGGACCAATTTATGTTAGTGATTGTGTTGGTAATCACAATTTCAAGTTGCTCAAATCTCTTGTTTTGCCCGATGGTTCTATCTTGCGTTGTCAACATTACGCACTCCCTACACGAGATTGCTTGTTTGAAGACCCTTTGCATAATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAATATACAGGTGTTTTGGGTCTTTTCAACTGCCAAGGTGGTGGGTGGTGTCCTGAGACACGGCGAAACAGGAGTGTATCTGAATTTTCACGCGCGGTGACATGTTATGCAAGTCCCGAAGACATTGAATGGTGCAATGGGAAAACTCCAATGAGCACCAAAGGTGTGGATTTTTTTGCTGTGTATTTTTTCAAGGAGAAGAAACTGAGGCTCATGAAGTGTTCTGATAGATTGGAAGTTTCGCTTGAGCCATTTAGTTTTGAGCTAATGACAGTGTCTCCAGTGAAAGTGTTTTCGAAAAGGTTTATACAGTTTGCACCGATTGGGTTAGTGAACATGCTGAACTCTGGTGGTGCGATTCAGTCTCTGGAGTTTGATGATAATGCAAGTTTGGTCAAGATTGGGGTGAGAGGTTGCGGGGAGATGAGCGTGTTTGCGTCTGAGAAACCGGTTTGCTGCAAAATTGATGGGGTTAAGGTGGAATTTCTTTATGAGGACAAAATGGCAAGAGTTCAAATTCTGTGGCCTAGTTCTTCAACATTGTCTTTGGTCCAGTTTTTATTTTGA 2400 0.4425 MAPPSITKTATLQDVISTIDIGNGNSPLFSITLDQSRNFLANGHPFLTQVPPNITTTTTTTASSFLNLKSNKDTIPNNNNTMLLQQGCFVGFNSTEPKSHHVVPLGKLKGIKFMSIFRFKVWWTTHWVGTNGQELQHETQMLILDKNDSLGRPYVLLLPILENTFRTSLQPCLNDHIGMSVESGSTHVTESTFKACLYIHLSNDPYSLLKEAVKVIQTQLGTFKTLEEKTAPSIIDKFGWCTWDAFYLKVHPKGVWEGVKSLTDGGCPPGFVIIDDGWQSICHDDDDEDDSGMNRTSAGEQMPCRLVKYEENSKFREYENPENGGKKGLGGFVRDLKEEFGSVESVYVWHALCGYWGGVRPGVYGMPKARVVVPKVSQGLKMTMEDLAVDKIVENGVGLVPPDFAHEMFDGLHSHLESAGIDGVKVDVIHLLELLSEEYGGRVELARAYYKALTSSVKKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCSDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGNHNFKLLKSLVLPDGSILRCQHYALPTRDCLFEDPLHNGKTMLKIWNLNKYTGVLGLFNCQGGGWCPETRRNRSVSEFSRAVTCYASPEDIEWCNGKTPMSTKGVDFFAVYFFKEKKLRLMKCSDRLEVSLEPFSFELMTVSPVKVFSKRFIQFAPIGLVNMLNSGGAIQSLEFDDNASLVKIGVRGCGEMSVFASEKPVCCKIDGVKVEFLYEDKMARVQILWPSSSTLSLVQFLF 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01993 799 Gene3D Aldolase class I 236 572 IPR013785 -
Vifa2g01993 799 FunFam Probable galactinol--sucrose galactosyltransferase 5 236 575 - -
Vifa2g01993 799 Pfam Raffinose synthase or seed imbibition protein Sip1 33 783 IPR008811 -
Vifa2g01993 799 SUPERFAMILY (Trans)glycosidases 233 583 IPR017853 -
Vifa2g01993 799 PANTHER - 32 796 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01993 Vifa-Chr2 519423074 519427311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01993 35 799 Glycoside Hydrolase AT5G40390 63.131 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01993 K06617 - gmx:100800308 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01993 2 519423074 519427311 Vifa2g01993 2 519423074 519427311 ECH