Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01989 ATGTTGACTCAGTTTCAGTGGCTCCATTCTGAACTTACCAACGTTTGCAAGTCTCTATTTCGTGTAAAGCAGTTACATGCTTGCCTTTTGAAAACCCATCTCTCACAAGACCCTTTTTACGCAACTCAAATCATTAGACTTTATGCATTTAACAATCACATTAACTACGCCTATCACGTGTTCGACAAAACTTCCACCCGAAGTGTCTACCTTTGGAATTCCATGATTCGGGCCTTTGCCAAGACTCAAAGATTTAGCAATGCAATCTCTCTATTTAGAACCATGCTTGAGGCTGACATAAGGCCTGATAATTATAGTTATGCTTGTGTTATACGTGCATGCTCTGAGAATTTTGATTTTGGTATGTTAAGAGTTGTTCATGGAAGTGCTGTGTCTGCAGGGTTGGGACTGGACCCTATTTGTTGTAGTGCACTTGTGAGTGCTTATGCAAAAGTTGGTCTTGTTAATGAAGCGTGTAGAGTGTTTAATGGGATTGATGAGCCGGATTTAGTTTTGTGGAACTCATTGATTTCTGCTTATGTGTTTTCTGGTATGTGGGATATTGGGATTCAAATGCTAAGCTCGATGAGAATTTCAGGGAAGAAACCCGACGGGTTCACATTGGCTGGGTTGCTTGTCGGTATTGCAGATTCTAGCTTGCTTAGCATTGGGCAAGGATTACATGGTTTAAGTCAAAAGAATGGGCTGGATTCTGATTCTCATGTAGGTAGTTTACTGGTGAGTATGTATTTGAGATGTAAGTGCATGGACTCAGCTTATAGAGTCTTTTGCTGTATTTTCAATCCTGATTTGGTTACATGGTCTGCTCTAATAGCTGGTTATTCTCAGTGTGGGGAGTATAAAAAAGCATTGCTCTTTTTCAAGAAATTAAACACGGAGAGCAAGAAACCAGATTCTGTTTTGATTGCTACTGTGTTGGCTTCTATAGCTCAAACAGCAAATGTAGTACCAGGATGTGAGGTACATGGTTACGTTCTTCGGCATGGATTGGAATCAGATGTCAAGGTCTCCTCAGCTCTCATAGACATGTATTCAAAGTGTGGCTTCCTGAACTTGGGAACTCGTGTTTTCAAGATGATGCCTGAACGGAATATAATTTCTTATAATTCAATAGTTTTGGCTCTTGGCTTGCATGGATGTGCGTCCGAGGCTTTTTTGATGTTTAATGAGATACTAGAGAAAGGATTGGTACCTGATGAAGCAACATTCTCTGCTCTCCTTTGTGCTTGTTGTCATGCTGGCCTGGTCAAAGACGGCCGGGAGATTTTCCGGAGAATGAAAGACGAATTCAACATTGAAGCTAGGCCTGAGCACTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTAGAAGAGGCCCACTATCTCACTCGGTCCTTACCTGAACCAGTAGACAAGGCCATTCTGGGAGCCTTATTATCATGCTGTGATTCTTATGGAAATTCTGAGTTGGCAGAAACTATAGCTCAGCAGATTTTTAAAAGTAATCCTGCTGACAATGTTTACAAGGTTATGCTTTCGAATATATATGCTGGGGATGGGAGGTGGGATGATGCTAAGAAGTTGAGGGATAAAATAACAGGAGGTCCGAAGAAAATGCCTGGAGTTAGTTGGATTGAAGGAAATTATTATTAA 1662 0.4122 MLTQFQWLHSELTNVCKSLFRVKQLHACLLKTHLSQDPFYATQIIRLYAFNNHINYAYHVFDKTSTRSVYLWNSMIRAFAKTQRFSNAISLFRTMLEADIRPDNYSYACVIRACSENFDFGMLRVVHGSAVSAGLGLDPICCSALVSAYAKVGLVNEACRVFNGIDEPDLVLWNSLISAYVFSGMWDIGIQMLSSMRISGKKPDGFTLAGLLVGIADSSLLSIGQGLHGLSQKNGLDSDSHVGSLLVSMYLRCKCMDSAYRVFCCIFNPDLVTWSALIAGYSQCGEYKKALLFFKKLNTESKKPDSVLIATVLASIAQTANVVPGCEVHGYVLRHGLESDVKVSSALIDMYSKCGFLNLGTRVFKMMPERNIISYNSIVLALGLHGCASEAFLMFNEILEKGLVPDEATFSALLCACCHAGLVKDGREIFRRMKDEFNIEARPEHYVYMVKLLGSAGELEEAHYLTRSLPEPVDKAILGALLSCCDSYGNSELAETIAQQIFKSNPADNVYKVMLSNIYAGDGRWDDAKKLRDKITGGPKKMPGVSWIEGNYY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01989 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Vifa2g01989 553 NCBIfam pentatricopeptide repeat 70 103 IPR002885 -
Vifa2g01989 553 NCBIfam pentatricopeptide repeat 373 407 IPR002885 -
Vifa2g01989 553 NCBIfam pentatricopeptide repeat 409 436 IPR002885 -
Vifa2g01989 553 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Vifa2g01989 553 Gene3D Tetratricopeptide repeat domain 320 445 IPR011990 GO:0005515
Vifa2g01989 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vifa2g01989 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Vifa2g01989 553 Pfam E motif 488 549 IPR046848 -
Vifa2g01989 553 Pfam PPR repeat family 68 114 IPR002885 -
Vifa2g01989 553 Pfam PPR repeat family 371 419 IPR002885 -
Vifa2g01989 553 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 342 552 - -
Vifa2g01989 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vifa2g01989 553 FunFam Pentatricopeptide repeat-containing protein 226 329 - -
Vifa2g01989 553 Gene3D Tetratricopeptide repeat domain 225 319 IPR011990 GO:0005515
Vifa2g01989 553 Gene3D Tetratricopeptide repeat domain 124 222 IPR011990 GO:0005515
Vifa2g01989 553 Gene3D Tetratricopeptide repeat domain 8 123 IPR011990 GO:0005515
Vifa2g01989 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vifa2g01989 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 549 IPR046960 GO:0003723|GO:0009451
Vifa2g01989 553 SUPERFAMILY TPR-like 67 530 IPR011990 GO:0005515
Vifa2g01989 553 Pfam PPR repeat 141 163 IPR002885 -
Vifa2g01989 553 Pfam PPR repeat 171 200 IPR002885 -
Vifa2g01989 553 Pfam PPR repeat 272 297 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01989 Vifa-Chr2 517216354 517218015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01989 29 549 Glycoside Hydrolase AT3G49170 30.057 3.76e-77 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01989 - - gmx:100820049 898.271