Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01985 ATGGCCTCAGCTTCGCAAAAGACGACGTCACCATCGCCTTCTCCTTGTTGTCCCCCTAGCGACACTTCCCGCTTAGCCGCGACTTCTGCCGCCGCCGTCGTCAAATCGGATCGCCTCCCTAACACTGTTGCCTTGATTCGTCCAATCGATTCAATTCCTGAATCGAATCCCACCAATGTCCCTTCTGCTAAGGGTATCCCTTCAATGACAAGGCCACAGTCAAGTCATCCTTTGGACCCTTTAACTGCGGCAGAAATTTCTGTGGCAGTGGCAACTGTGAGGGCTGCTGGAGCCACTCCAGAGCTTAGGGATAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAAAATGTTGTTGCACTGGCAGACGCTTATTTTTTTCCACCTTTCCAACCATCATTACTTCCTAGAAGTAAAGGGGGGCCTGTAATTCCCACTAAACTCCCTCCAAGATGCGCTAGACTTGTTGTTTACAATAAGAAATCAAATGTGACTGCTCTGTGGATTGTCGAATTATCACAAGTTCATGCAGTAACTCGGGGTGGCCATCATCGAGGAAAAGTAATTTCATCACGTGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGCGAGGCTGTTGTTAAAAGTTTTCCCCCTTTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGATCTTGTAATGGTTGATCCCTGGTGCGTTGGATATCATAGTGAAGCTGATGCTCCTGGTAGAAGACTTGCCAAACCGCTCCTATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGTTATGCTCGCCCAATCGAGGGCATCTATATCCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGACCGTAAACTTGTTCCTTTGCCTCCTGTTGATCCCTTGAGAAACTATACTCCTGGTGAATCCAGAGGTGGCTCCGATAGAAGTGATGTAAAACCTTTACAAATTGTTCAACCTGAAGGTCCAAGCTTTCGTGTCAATGGATATTTTGTTGAATGGCAGAAGTGGAATTTGCGTATTGGATTCACACCCAAAGAAGGTTTGATCATATATTCTGTTGCGTATGTTGATGGTAGTCGAGGGAGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGGGATCCAAATGAACCTCATTATAGGAAAAATGCTTTTGATGCCGGTGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAAAAGGGATGTGATTGTTTGGGATACATCAAATATTTTGATGCTCACTTCACGAATTTCACGGGTGGGGTGGAAACTATCGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGAAGGTCTAGAAGACTTTCAGTTTCATTTGATGGAAAGATTGAAGCTGAAGTCAAGCTGACTGGAATTCTCAGCTTAGGAGCCTTGATGCCTGGAGAATATCGAAAATATGGAACCATGATTGCACCAGGTCTATATGCTCCAGTTCATCAACACTTTTTTGTTGCTCGCATGGACATGTCTGTTGATTCTAGACCTGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAGTTGAAGAACCTGGTGAGAATAATATTCACCATAATGCGTTCTATGCTGAAGAGACTTTGCTCAAATCTGAATCTGAAGCAATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGGTTGTTAGGAACACAAGAACTGGCAACAGAACTGGACAATTAACAGGCTACAAGCTGGTACCGGGCTCAAACTGCTTGCCATTGGCAGGTTCTGAGGCCAAATTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATGTTTGGGTAACATCATATTCACGTGATGAAATGTTTCCCGGAGGAGAATTTCCCAATCAAAATCCGCGAGCTGGTGAAGGACTATCTACATGGATTAAGCAAAACCGGCCTTTGGAAGAAACTAATATAGTTCTTTGGTATGTATTTGGAATCACACATGTTCCTCGTCTAGAAGACTGGCCTGTTATGCCAGTAGAGCACATTGGTTTTATGCTCATGCCTCATGGATTCTTCAATTGTTCCCCTGCAATAGATGTCCCGCCTAATTCATGTGAAGCGGAATCTAAAGACACTGACATCAAGGATAACGGTGCTTCTTCGAAGCCGATTCAGAACGGATTAGCATCGAAGCTTTAG 2271 0.4417 MASASQKTTSPSPSPCCPPSDTSRLAATSAAAVVKSDRLPNTVALIRPIDSIPESNPTNVPSAKGIPSMTRPQSSHPLDPLTAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRSKGGPVIPTKLPPRCARLVVYNKKSNVTALWIVELSQVHAVTRGGHHRGKVISSRVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPGRRLAKPLLFCRSESDCPMENGYARPIEGIYILVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGESRGGSDRSDVKPLQIVQPEGPSFRVNGYFVEWQKWNLRIGFTPKEGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFDGKIEAEVKLTGILSLGALMPGEYRKYGTMIAPGLYAPVHQHFFVARMDMSVDSRPGEALNQVVEVNMKVEEPGENNIHHNAFYAEETLLKSESEAMRDCNPLTARHWVVRNTRTGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNVWVTSYSRDEMFPGGEFPNQNPRAGEGLSTWIKQNRPLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPAIDVPPNSCEAESKDTDIKDNGASSKPIQNGLASKL 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01985 756 FunFam Amine oxidase 60 203 - -
Vifa2g01985 756 MobiDBLite consensus disorder prediction 728 756 - -
Vifa2g01985 756 Pfam Copper amine oxidase, N3 domain 201 304 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 PANTHER COPPER AMINE OXIDASE 71 735 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 FunFam Amine oxidase 206 309 - -
Vifa2g01985 756 Pfam Copper amine oxidase, N2 domain 76 165 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 Gene3D - 61 203 - -
Vifa2g01985 756 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g01985 756 MobiDBLite consensus disorder prediction 742 756 - -
Vifa2g01985 756 SUPERFAMILY Amine oxidase catalytic domain 324 726 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 Gene3D - 205 308 - -
Vifa2g01985 756 Pfam Copper amine oxidase, enzyme domain 330 722 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 MobiDBLite consensus disorder prediction 54 77 - -
Vifa2g01985 756 Gene3D Copper amine oxidase, catalytic domain 317 726 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 FunFam Amine oxidase 320 728 - -
Vifa2g01985 756 SUPERFAMILY Amine oxidase N-terminal region 200 317 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vifa2g01985 756 SUPERFAMILY Amine oxidase N-terminal region 74 202 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01985 Vifa-Chr2 513534834 513540926 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01985 K00276 - gmx:100798722 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01985 2 513534834 513540926 Vifa2g01985 2 513534834 513540926 ECH