Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01980 ATGTTGCAAAAACTATATGTGTGTGTATTGGAAGCCAGAGACATACCCGTGAAGAATTCTCGCGTGAAGCTTAAACTTGGGAAGTTCAAGTATAAGACAAGGATATTGAGAAACACGTTCAGTCCCATTTGGAACGAGGAGTTTGTTTTCAAGGTGAAGGATATTGCAGATGAAGTGCTTGATGTAATTCTTGTTAATCACAATCATGATTCTGTAGTGGATTTTGTGGGTGACGTGCGGATTCCGGTTGGCTCAGTTGTTTTTGAGGAGGATGATAAGCAAATATTGCCACCAACGTGGTTCTCTCTTCAATGTGTTAACAAGAGTGGCAAGTTTTTCAACAAATTTTGTGGGAAGATTCTTCTTACAATATCTCTTCATTGCAAGGACCATGCTTCTTTAATAAATCATAAGCATTCTCCAAACTCAACTACTTTAATAAATCATAAGCATTCTCCAAACTCAACTACTGCATCTGAGAACTCAACAGACTTGGAAGGTCTTCACATTTCATCTCAACCATCATTTCGGAAAATTCATAAAATGGGTGAAGGCAAACATTTTTTCAAGGTTATTGCTAGGATTTTTAATAAAAAGGAACGAAACTCAAAATCTGTGGATTGTTCAGAATCATCAAATTCATTATCTGATAATGAAGACAGTGTACAGGAAAGTTCATCTCCATGTAGCTTTGAAGAAGGCATTGCAATTATGGAATCAAAAGATAACCAGCCAGAAAGTCCTGAAAATTTGCAAGGTGGCATTCTAGTAGATAAGATTTATGCAGTGTCTCCGTACAACCTTAATGTTGTTCTTTTTGCACCAAATTCACAGTTTAGGAAAGATTTAGCAGAACTACAAGGAACAACAAATTTACAAGAGGGAGCTTGGTCCTGGAAAAGTGAAGACATGTCTTGTTTGACTCGAGTTGTTACTTATACAAAAGCTGCTTCAAAATTAGTTAAGGCTGTCAATGCCACTGAGGATCAAACCTATATTAGAGTAACTAAAGATGAATTTAATGTACTTATTAGTGTATGCACTCCTGAGGTTCCATATGGGAATACATTTCGAGTTGAATTGCTTTACAAGATAATGCCTGCAGATGTGTCTTCTGGAGAGGAATCCTCTCACCTTATAATATCATGGGGAATTATCTTCCTTCAAAGCACAATGATGAAAGGTGTGATAGAGAGTGGTGCTAAACAAGGCTTGAAGGAGAGTTTTGACCAGTTTTCCAACCTACTTGCTCGGAGTTTCAAGGTGCTAGATAAGGAAAATTTTACTAACAAAGAACAATTCTTAGCTACTGTGCAGACAGAAAGCCAGTGGAATTGGTGGCAGGCAATTGCATACTTCTGGAATCTCACATCAGTTTCCACACTTTTTATGTTTTTGTATGTGTTGTTGCATATTTTAAGGTGTGGTCCAAGTCAACCTCAGGGCTTGGAATTTAGAGGGATTGAGCTGCCAGATAGCTTAGGAGAGCTGGTTACAAGTGGAATTTTAGTAATCCAGTTGCAGCGTGTTTATAATATGGTATCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCACGGCATGAAGGCACATGGTGATGGATGGGTTGTTACTGTAGCTTTAATTGAGGGGGTTGACCTGGCTTCATTGGAATCAACAGGGTTGTCAGATCCCTATGTGGTTTTCACTTGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTGAGACATTGGATCCTCAATGGAATGAGCTATTAGAGTTCGATGCTATGGAAGAACCGCCGTCAGTTCTAGGGGTGGAAGTTTTTGATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAAATCAATTTCCTAAAGCACACGTCAACAGAATTGGCAGACATGTGGGTCATGCTTGAGGGAAAGCCCACTCTTTCTGTTCAATCGAAATTGCATTTGAGAATTTTCTTGGATAATAATAAAGGAGTTGAAACTATAAAGGATTACTTGGAGAAGAAGGAAAAGGAAGTAGGCAAAAAGTTGAGTCTTCCATCACCTCAAAGGAATTCTACATTCCAGAAATTGTTTGGGTTGCCTCCAGAAGAATTTCTGATCAACGATTTCACATGTTACCTGAAGAGAAAAATGCCTTTACAGGGTCGACTATTTCTTTCGGCAAGGATTATGGGATTTTATGCCAATCTATTTGGACATAAAACCAATTTTTTCTTCCTTTGGGAAGATATTGAAAGCATTCAAGTACTTCCTCCATCATTAGCATCATTAGGAAGCCCTACTTTGGTCATAATTCTTCGAAGAGGACGAGGCACTGATGCAAGACATGGTGCCAAGATGCAAGATGAAGAAGGAAGACTTAGGTTTCATTTTCAGTCATTTGTCTCATTCGGTTCTGCATCCAGAACAATAACGGCATTGTGGAGAACAAGAATACTCAACCCCTATCAGAAAGACCAGATTACAGAAGAGCATGAGGATCAGGAAGTCTTGTTAATGCCTGAGAATTCTGGATCTATGATAGAAGCTGAGGAAAAAATGTCCAGAATTTTCTCTGCAGAACTACCCATTAAGATGAGATCAGTGATGGTGGGAATTTTTGATGGAGGACACCTAGAACATAAGATTATGAAGAGAACTGGTTGTATGAACTATGACACTACAGATTGGGAACTAGTAAAACCTGATGTCCTAGAAAGGCATGTTTCTTACCAATTTAACCGTCATCTGTCAGTTTTCGATGTCACAAGCACACAACAAAAATTACCAAATACAAACACTGAAGGATGGATTGTGAATGAAGTTATGGTCCTTAATGGTGTCCCATTTTCTGATCATTTCCATATTCATTTTAGGTACGAAATCGAGAAATCAGTTCTTGACGAATGTGCATGCAAATGTGATGTATACATTGGCATTATGTGGCTTAGGAGCTCAAAGTTTCAGCAAAGGATCAACAGGAACATAACAGCCAAGTTTAAAACTCAATTGGAGAAAATATTTGAACTGGTGCAGAAAGAGATTTTATTAATGTCTCAGAACTCGTATGTGTAA 3069 0.3851 MLQKLYVCVLEARDIPVKNSRVKLKLGKFKYKTRILRNTFSPIWNEEFVFKVKDIADEVLDVILVNHNHDSVVDFVGDVRIPVGSVVFEEDDKQILPPTWFSLQCVNKSGKFFNKFCGKILLTISLHCKDHASLINHKHSPNSTTLINHKHSPNSTTASENSTDLEGLHISSQPSFRKIHKMGEGKHFFKVIARIFNKKERNSKSVDCSESSNSLSDNEDSVQESSSPCSFEEGIAIMESKDNQPESPENLQGGILVDKIYAVSPYNLNVVLFAPNSQFRKDLAELQGTTNLQEGAWSWKSEDMSCLTRVVTYTKAASKLVKAVNATEDQTYIRVTKDEFNVLISVCTPEVPYGNTFRVELLYKIMPADVSSGEESSHLIISWGIIFLQSTMMKGVIESGAKQGLKESFDQFSNLLARSFKVLDKENFTNKEQFLATVQTESQWNWWQAIAYFWNLTSVSTLFMFLYVLLHILRCGPSQPQGLEFRGIELPDSLGELVTSGILVIQLQRVYNMVSHFVQARFQMGTDHGMKAHGDGWVVTVALIEGVDLASLESTGLSDPYVVFTCNGQTRSSSVKLETLDPQWNELLEFDAMEEPPSVLGVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVMLEGKPTLSVQSKLHLRIFLDNNKGVETIKDYLEKKEKEVGKKLSLPSPQRNSTFQKLFGLPPEEFLINDFTCYLKRKMPLQGRLFLSARIMGFYANLFGHKTNFFFLWEDIESIQVLPPSLASLGSPTLVIILRRGRGTDARHGAKMQDEEGRLRFHFQSFVSFGSASRTITALWRTRILNPYQKDQITEEHEDQEVLLMPENSGSMIEAEEKMSRIFSAELPIKMRSVMVGIFDGGHLEHKIMKRTGCMNYDTTDWELVKPDVLERHVSYQFNRHLSVFDVTSTQQKLPNTNTEGWIVNEVMVLNGVPFSDHFHIHFRYEIEKSVLDECACKCDVYIGIMWLRSSKFQQRINRNITAKFKTQLEKIFELVQKEILLMSQNSYV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01980 1022 MobiDBLite consensus disorder prediction 205 228 - -
Vifa2g01980 1022 ProSiteProfiles VASt domain profile. 252 424 IPR031968 -
Vifa2g01980 1022 Gene3D C2 domain 522 657 IPR035892 -
Vifa2g01980 1022 Gene3D - 688 815 IPR011993 -
Vifa2g01980 1022 CDD C2 539 639 - -
Vifa2g01980 1022 SMART gram2001c 690 756 IPR004182 -
Vifa2g01980 1022 SMART C2_3c 4 95 IPR000008 -
Vifa2g01980 1022 SMART C2_3c 538 637 IPR000008 -
Vifa2g01980 1022 ProSiteProfiles VASt domain profile. 851 1013 IPR031968 -
Vifa2g01980 1022 MobiDBLite consensus disorder prediction 139 167 - -
Vifa2g01980 1022 Pfam VAD1 Analog of StAR-related lipid transfer domain 855 994 IPR031968 -
Vifa2g01980 1022 Pfam VAD1 Analog of StAR-related lipid transfer domain 256 404 IPR031968 -
Vifa2g01980 1022 Gene3D C2 domain 2 158 IPR035892 -
Vifa2g01980 1022 Pfam C2 domain 538 637 IPR000008 -
Vifa2g01980 1022 Pfam C2 domain 4 91 IPR000008 -
Vifa2g01980 1022 CDD C2 5 103 - -
Vifa2g01980 1022 ProSiteProfiles C2 domain profile. 1 96 IPR000008 -
Vifa2g01980 1022 Pfam GRAM domain 691 761 IPR004182 -
Vifa2g01980 1022 PANTHER BNAA05G37250D PROTEIN 4 1014 IPR044511 -
Vifa2g01980 1022 MobiDBLite consensus disorder prediction 207 228 - -
Vifa2g01980 1022 ProSiteProfiles C2 domain profile. 518 637 IPR000008 -
Vifa2g01980 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 537 662 IPR035892 -
Vifa2g01980 1022 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 132 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01980 Vifa-Chr2 511597605 511602639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01980 2 170 Lipid Metabolism Gene Families AT1G22610 28.000 3.97e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01980 - - gmx:100811103 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01980 2 511597605 511602639 Vifa2g01980 2 511597605 511602639 ECH