Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01971 ATGGATCCCAATCCAGGTACCTTCCCGATTCTCTCTTACGTCATGTCCCGTTTCCCTTCCTTAGCATCCCTAACCACCGCCACCGCCACATCCTCCGACACCGAATTATACGACATCGACATCGAACAGCCACGCTCCGAAATCGTCGGCAAAATGCCAAACCTAGCCGACCCGGAACTAATCGCATCCATGGGCCGGGCCATCGCCAACGTTCAGCAGGCCCGGTCCGTCCTTAACCTAATCGGCGAACGTCCGACTCACGAGGACATCGACCTCGCGAAGGCGAAGCTCGCGGAGACTGAAGCCCAGCTATCCCGCCAGCTGGAAGAAATCGTGCATCATCCGCGGCCTCCGGAGATCAAGATCCAAGGATGGCGGGCTCAACAAGCCGAAAAGGAGAAGGAGTGTAGGGAAGAGGCGGAGAAGGAGAAGCGGATATGGAAATCGCTTATTCAGCTTGATGAGATGCATGAGGCTTATGAGAAGCTGCTTAAGGATTCGGAGAAGCGGTTGGTTAGAATGTACGATTCTGCTGGAGATGGCGATGTTGGAGGAGATGGTGATGAGGTGAATGAAGAGGTGGTAGGGATTCTGCAGGAAGCGGATGGGAAAGGGATGGAGAGAATTGACCTTTCTGGCCGGACATTGAAGATTTTGCCGGAAGCTTTTGGTCGGATTTCGGGTTTGCTTGTGCTTGACGTTTCAGCTAATCAGCTTTCGGCAATTCCTGACTCAATAGCTGGCTTGCAAAATCTGGAGGAGCTTAATCTCTCTGCAAATCTTTTGGAATCACTGCCTGATTCAATTGGGTTGCTACAAAAATTGAAATTGCTCAATGTTTCTGGAAACAAGCTTACTGCCCTTCCTGATTCCATTTGTCAGTGCAGGTCATTGGTGGAGCTGGATGCAAGCTTTAACAATCTGTCTTACTTGCCAACAAACATTGGGGAATTGGATCTCAGCAATAATCAGATTCGTGCACTTCCCGATACATTCGGCTACCTTGATAACTTGACCAAGCTCAACTTGGAACAGAATCCTCTTGAAGTGCCACCAGTGGAGATTGTGAATCAAGGGGTCGAAGCCATATTGACTTTTATGACCAAGAGGTGGATTGATATCTTGCAAGAGGAAGAAAGAAAGAGCAATCAAGAAATGCAAGAACAAGTAGAGGGTGGCTGGTTAACACGAAGCACTTCGTGGTTGAAGAATGTTTCCGGAAATGTAGCTGGGTATATCGGAACTGCTGTTGGATCTCCTATGTCACCCAAATCTCCTAAGGAAGATTATCTTAATCAACAGCTATAA 1308 0.4862 MDPNPGTFPILSYVMSRFPSLASLTTATATSSDTELYDIDIEQPRSEIVGKMPNLADPELIASMGRAIANVQQARSVLNLIGERPTHEDIDLAKAKLAETEAQLSRQLEEIVHHPRPPEIKIQGWRAQQAEKEKECREEAEKEKRIWKSLIQLDEMHEAYEKLLKDSEKRLVRMYDSAGDGDVGGDGDEVNEEVVGILQEADGKGMERIDLSGRTLKILPEAFGRISGLLVLDVSANQLSAIPDSIAGLQNLEELNLSANLLESLPDSIGLLQKLKLLNVSGNKLTALPDSICQCRSLVELDASFNNLSYLPTNIGELDLSNNQIRALPDTFGYLDNLTKLNLEQNPLEVPPVEIVNQGVEAILTFMTKRWIDILQEEERKSNQEMQEQVEGGWLTRSTSWLKNVSGNVAGYIGTAVGSPMSPKSPKEDYLNQQL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01971 435 SUPERFAMILY L domain-like 207 349 - -
Vifa2g01971 435 SMART LRR_bac_2 312 331 - -
Vifa2g01971 435 SMART LRR_bac_2 226 245 - -
Vifa2g01971 435 SMART LRR_bac_2 249 268 - -
Vifa2g01971 435 SMART LRR_bac_2 272 291 - -
Vifa2g01971 435 SMART LRR_typ_2 249 271 IPR003591 -
Vifa2g01971 435 SMART LRR_typ_2 313 334 IPR003591 -
Vifa2g01971 435 SMART LRR_typ_2 335 358 IPR003591 -
Vifa2g01971 435 SMART LRR_typ_2 226 248 IPR003591 -
Vifa2g01971 435 SMART LRR_typ_2 272 295 IPR003591 -
Vifa2g01971 435 FunFam Plant intracellular Ras-group-related LRR protein 9 132 310 - -
Vifa2g01971 435 MobiDBLite consensus disorder prediction 416 435 - -
Vifa2g01971 435 Pfam Leucine rich repeat 251 308 IPR001611 GO:0005515
Vifa2g01971 435 ProSiteProfiles Leucine-rich repeat profile. 314 335 IPR001611 GO:0005515
Vifa2g01971 435 Gene3D Ribonuclease Inhibitor 75 375 IPR032675 -
Vifa2g01971 435 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515
Vifa2g01971 435 Coils Coil 90 110 - -
Vifa2g01971 435 Coils Coil 150 170 - -
Vifa2g01971 435 PANTHER - 206 374 - -
Vifa2g01971 435 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01971 Vifa-Chr2 509195912 509198618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01971 206 414 Miscellaneous Gene Families AT4G39270 26.721 2.46e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01971 - - gmx:100803823 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01971 2 509195912 509198618 Vifa2g01971 2 509195912 509198618 ECH
Vifa2g01971 2 509195912 509198618 Vifa2g01971 2 509195912 509198618 PCT