Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01967 ATGAGTTCTCCTATGGAGACGGAGCAAAACCCTCCGACCGATCAAAACGGCGCCGCTTCTCAACACTCACCTCCACCTCCTCTGCTACCGGAGGACAAAGTTCTTGTGCCCATCGAGGTTTGCTTAAAACCTTCCAGTACAGCTTCCATTCACGATGTTCGTTCTGCCATTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGCGGACCAATTCCCGTTCCCCTTGATGAGCCGTTTCTTGCTGATAATGTGCAAAGAATTTGCATTTGTGATGCAGGTGAAGGGATGCAAAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCGGTTGTACATGTCTTTCAGCTTAGCGAGGAAGGACCCTGTGAGGATATCAGCTCTGATGGACAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTGATATATGAATCTGGTCTAAAGCAAAGGTTGTTGCGGTATGCAGCGAGTGCTTTGCTCTTCACGGAAAAGGCTGTTGATCCGTTCCTTGTTTCATGGAACCGCATAATTCTTTTGCACGGACCTCCTGGAACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAGCTATCAATTCGATTCAATTCGAGATTCACACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGCGGCAAGCTGGTAGCAAAGTTATTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTCGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCTGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTATTAACTCAGATGGATAAGCTAAAATCAGCTCCAAATGTGATCATTCTAACCACATCCAACATTACCGCTGCTATCGATATTGCTTTTGTTGACCGAGCTGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAAGAACTCATGCGTACAGGGATATTAACTAGTTTTGAGGACTGTAAGAATATCATACTTCCAAGTTATGCTAGTGCAAGACAAAGGATGAATGCACCCAATTTTCAAGAGGCTACTACATCCATGCAACTGTGCAAGAAACTAGTTGAAACTGCAGAGGCATGCGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATCAAGTTCCTAAGTTCAATGGTAGATACAGCAAAGAGGGAGCGTTCTGAGCTTCCCGATTAA 1356 0.4351 MSSPMETEQNPPTDQNGAASQHSPPPPLLPEDKVLVPIEVCLKPSSTASIHDVRSAIEGMLEKRSLSYNGGPIPVPLDEPFLADNVQRICICDAGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFTQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSFEDCKNIILPSYASARQRMNAPNFQEATTSMQLCKKLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLSSMVDTAKRERSELPD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01967 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 419 IPR027417 -
Vifa2g01967 451 Gene3D - 128 352 IPR027417 -
Vifa2g01967 451 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g01967 451 Pfam ATPase family associated with various cellular activities (AAA) 189 334 IPR003959 GO:0005524|GO:0016887
Vifa2g01967 451 FunFam pachytene checkpoint protein 2 homolog 129 351 - -
Vifa2g01967 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 303 317 IPR001270 GO:0005524
Vifa2g01967 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 189 207 IPR001270 GO:0005524
Vifa2g01967 451 CDD RecA-like_Pch2-like 135 333 - -
Vifa2g01967 451 ProSitePatterns AAA-protein family signature. 307 326 IPR003960 GO:0005524|GO:0016887
Vifa2g01967 451 SMART AAA_5 185 337 IPR003593 GO:0016887
Vifa2g01967 451 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g01967 451 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 29 448 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01967 Vifa-Chr2 507104281 507110871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01967 189 355 Calmodulin-binding Proteins AT3G56690 29.586 6.59e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01967 K22399 - gmx:100795009 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01967 2 507104281 507110871 Vifa2g01967 2 507104281 507110871 ECH