Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01952 ATGGGTGGATCACATTCAAAACGGAGGGCCTCTAGAAGCTCCAGACAGCGTTCTTCATCATCTTCGAGGTCAAATCCTATGTTTCCTCAATATCAATCTCCTTATTTGCCACAACCACCACAAGATCATGGAACAATGGGGTATAATTATGGGGTTCAACCTCCACCTCAAAGCTATGGTGGTACTGTTGCTCACGCTCCTCAACAAAGCAAGAGTTCAGACAAAAAGTTTACAACGATAGGTGATAATTATAGTAGCTTGGAACAGGTAACTGAGGCTCTCGCAAGTGCTGGCCTAGAGTCTTCCAATCTCATTGTTGGTATCGATTTTACAAAAAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGTCTTCATCACATCGGGAATGAACAAAATCCGTATGAACAAGCTATATCTATCATTGGGAAAACACTGTTCTCCTTTGACGAGGATAACTTGATTCCCTGTTTTGGGTTCGGAGATGCTTCAACACATGACCAAGAAGTTTTTAGTTTCAATGCCGAGGATAGATTTTGTCATGGGTTTGAAGAAGTTTTGTCACGTTATAGGGAATTGGTTCCTCAATTAAGGCTTGCAGGACCCACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTCAAGGCCAATACCATGTTTTGTTGATTATAGCAGATGGACAGGTGACAAGAAGTGTTGACACAGAGCATGGACAATTGAGTACACAAGAAAGAAAAACCGTAGAAGCAATTGTGAAAGCTAGTGAATATCCCCTCTCAATCATACTAGTTGGAGTTGGAGATGGGCCGTGGGACATGATGAAAGAATTTGACGATAACATACCTGCTCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACCGAATTAATGTCAAAGAATATGGATCGGTCTAGAAAGGAAGCCGAGTTTGCACTTTCTGCGTTAATGGAAATACCTTCGCAGTACAAGGCAACACTAGAACTTAATATATTGAGCAATCGTAGAAGGAATGATATACATAGGATTCCTCTACCACCACCTCAATATGGAACATCATCTTTCAACACCCCAAAATCTTCCAATCAAAACAATTTTCGCCCCAGTGCACCATCTCAAAACAAACCAAGTGCTGGCACGAACCCCCATGCAAGTTCTGCTTCTGATAATCAGTTTTGTCCCATTTGTCTTTCAAATCCGAAGGATATGGCCTTTGGTTGCGGACATCAGACATGCTGCGAGTGCGGTCAAGATCTTGAGCTATGCCCCATTTGCAGGAGTAACATTGATACTAGAATAAAGCTTTATTAG 1332 0.4182 MGGSHSKRRASRSSRQRSSSSSRSNPMFPQYQSPYLPQPPQDHGTMGYNYGVQPPPQSYGGTVAHAPQQSKSSDKKFTTIGDNYSSLEQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGNEQNPYEQAISIIGKTLFSFDEDNLIPCFGFGDASTHDQEVFSFNAEDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPVIEMAITIVEQSQGQYHVLLIIADGQVTRSVDTEHGQLSTQERKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTELMSKNMDRSRKEAEFALSALMEIPSQYKATLELNILSNRRRNDIHRIPLPPPQYGTSSFNTPKSSNQNNFRPSAPSQNKPSAGTNPHASSASDNQFCPICLSNPKDMAFGCGHQTCCECGQDLELCPICRSNIDTRIKLY 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01952 443 SUPERFAMILY vWA-like 103 285 IPR036465 -
Vifa2g01952 443 MobiDBLite consensus disorder prediction 51 75 - -
Vifa2g01952 443 Pfam Zinc finger, C3HC4 type (RING finger) 397 438 - -
Vifa2g01952 443 SUPERFAMILY RING/U-box 395 439 - -
Vifa2g01952 443 MobiDBLite consensus disorder prediction 15 31 - -
Vifa2g01952 443 MobiDBLite consensus disorder prediction 1 75 - -
Vifa2g01952 443 PANTHER COPINE FAMILY PROTEIN 1 6 420 - -
Vifa2g01952 443 SMART VWA_4 101 304 IPR002035 -
Vifa2g01952 443 MobiDBLite consensus disorder prediction 347 391 - -
Vifa2g01952 443 ProSiteProfiles Zinc finger RING-type profile. 400 433 IPR001841 -
Vifa2g01952 443 MobiDBLite consensus disorder prediction 356 391 - -
Vifa2g01952 443 Pfam Copine 126 340 IPR010734 -
Vifa2g01952 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 443 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01952 Vifa-Chr2 504391127 504394195 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01952 K16280 - gmx:100790800 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01952 2 504391127 504394195 Vifa2g01952 2 504391127 504394195 ECH