Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01946 ATGGCTAGTAGTAATCTTCGTCAGTTACAAGCTGCTCCTAACAAAATGCAGCTAAAGAAGGAGAGACGCATGTTCTCTACTTCTGATGATAGTGCTATGATGAAACAGGTTCAGTCCACTCATGCACCTGATGGTCGCGAAATCGATGTTAAGCCTCTTATTCAAATTGTTGATGAAATCTTGATTCAAGTCATTGCTCGAAGCGTCGAGGGTCATGAACATGTGAAAAAAGAGCAAGAGACATTGGAAACTGCTGTTGCTTTGGCTGAATTTGATATGCTTGATGCACTCGCTTTTATTATTAACAAAATTTCTTGCGAGCTATCATGCAAATGCTCAGGAGGTGGAGATGCACATGCATCAACAATGGTGTTACTGAATTACCTATCAAGCTATTCATGGCATGCAAAAGTTGTGTTAGCCTTAGCAGCATTTGCTGTTATTTTCGGAGAGTTTTGGCTTGTTGCTCAATCAAGTGCTTCAAACACACTTGCAAAATCTGTGGCTCTCCTTAAACAACTACCTGACATTGTAGAGAATTCTGTTTCATTGAGACCACAATTTGATGCACTCAATAAGCTTGTGAAGGCTGCACTTGATGTTACAATGTGCATTGTTGAATTCAAGGAGTTACCTTCTGAATATATTTCAGAAGATGTTCCTCCTATGTCTGTTGCAAGTGCTCATATTCCTATTGCCACCTATTGGGTCATTAGAAGTATTGTAGCCTGTGCTTCACAAATTGCAAGTCTCATAGGGATGAGAAATGAGGCAATGTCATCAGCTTCAGAGGCATGGGAATTATCTAGTTTGGCTCACAAAGTTGCTAGTATATACGAGCACCTCAAAAACCAACTTGCTCTTTGCTATCAATATATAGATGAAAAGAGGCATATTGAGGCATTTCACAATCTGATACGTCTGTTCGAGACAGTTCATGTAGACAACATGAAAATCATGAGAGCACTAATTTATGCAAAGGATGATATCCCTCCACTTATAGATGGAACTTCAAAATTAAGGGTTAGTCTTGAGGTACTAAGGAGGAAACATGTGTTACTTCTCATATCAGATCTTGATATTTCACAAGAAGAGATTATGATACTCGATAATTTGTACAAAGATGCAAGATCGAGGGGCGAGACATACTATGAGATGGTATGGATTCCTGTTGTGGACAAAGCAACATGGAATGAAGTGAATAAGCAAAAGTTTGAGTATCTTCAATCATCAATGCCATGGTTCAGTGTTCGCGATCCATTCATTATCGAACCATCAGTGATTAAGTATATCAAAGAAGTGTGGAATTTCACAAAGAGAGCTATTCTAGTAGCTCTTGATCCACAAGGTAGATTGTCCTCCCAAAATGCTCTTCATATGATATGGATTTGGGGAAATTTGGCATTCCCTTTCACAAGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGATTTGGAGCCTTGAGCTTCTTGTGGATGGCATTGATCCCGCAGTTTTAGACTGGATGACAGAAGGAAAAATCATATGTCTATATGGAGGAGAAGATCTAGAGTGGATAGAAACGTTCACAAAAACAGCGATGAACCTAGCAAGAACAAGCAACTTCGATTTAGAGATGGTATACGTAGGAAAAAGCAATGCAAAAGAGCGAATGCAGAGAATGATAACCACCTTCAACTCAAAAAGATTCAGTTACTTTTTCCCAAACGTGACATCGATTTGGTTCTTTTGGGCAAGACTCGAGAGCATGTTATACTCAAAACTACAACACGGAAAGACAGTTGAAAACGACAAGATCATGAGTGAAGTTATGACAGTGCTTAGCTTCGATGGAAGCGACCGAGGGTGGGCGATATTCTGTAGAGGACCATCTGAAATGGCAAGAGCTAAAGGTGATACTGCTTTAACAAGTTTGAGAGATTTTGATAAATGGAAACATAATATTGAACAAGATGGTTGGGTTCCTGCATTGAATGATTATATTAAGGAAATTCAACAGCCGCATCATTGTAATCGGCTTATTCTTCCTGGCAGTACTGGTGGAATACCCCAGAAAGTTGTTTGCGCTGAATGCGGTCGTCAAATGGAGAAATATTTCATGTATCGTTGTTGTGTGGAGTGA 2121 0.3951 MASSNLRQLQAAPNKMQLKKERRMFSTSDDSAMMKQVQSTHAPDGREIDVKPLIQIVDEILIQVIARSVEGHEHVKKEQETLETAVALAEFDMLDALAFIINKISCELSCKCSGGGDAHASTMVLLNYLSSYSWHAKVVLALAAFAVIFGEFWLVAQSSASNTLAKSVALLKQLPDIVENSVSLRPQFDALNKLVKAALDVTMCIVEFKELPSEYISEDVPPMSVASAHIPIATYWVIRSIVACASQIASLIGMRNEAMSSASEAWELSSLAHKVASIYEHLKNQLALCYQYIDEKRHIEAFHNLIRLFETVHVDNMKIMRALIYAKDDIPPLIDGTSKLRVSLEVLRRKHVLLLISDLDISQEEIMILDNLYKDARSRGETYYEMVWIPVVDKATWNEVNKQKFEYLQSSMPWFSVRDPFIIEPSVIKYIKEVWNFTKRAILVALDPQGRLSSQNALHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPAVLDWMTEGKIICLYGGEDLEWIETFTKTAMNLARTSNFDLEMVYVGKSNAKERMQRMITTFNSKRFSYFFPNVTSIWFFWARLESMLYSKLQHGKTVENDKIMSEVMTVLSFDGSDRGWAIFCRGPSEMARAKGDTALTSLRDFDKWKHNIEQDGWVPALNDYIKEIQQPHHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01946 706 Pfam Sieve element occlusion N-terminus 28 313 IPR027942 -
Vifa2g01946 706 Pfam Sieve element occlusion C-terminus 475 704 IPR027944 -
Vifa2g01946 706 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 16 705 IPR039299 GO:0010088
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01946 Vifa-Chr2 502747076 502750008 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01946 - - gmx:100811452 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01946 2 502747076 502750008 Vifa2g01946 2 502747076 502750008 ECH