Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01936 ATGGCTGAGAAGTTGGGAGGTTCAGTAGAAAGGTCAAGCTTGAACAAACCTAACCCTACCCCTCCCAAACTCGTCGTTCTGGCTGACCTAAACGTCGATCCTCCTGAAGCCGACGACGACGATTCTTCCCTCCCCCCTCCTCCACACACTGAAATCACCAGGTTGATAAACGATGAAAGCAGTCAAGATAGGAGTTTGTTGTCCAAAGACACCGATAGTAATGAAGGAGAAGGTAAGAAATTGAACAAAGTGGCAAAATGCCGTTCCAAATCGAGTAAGACGGATTCTTCTATTGACTGTGGAGTTGATGCGGATGGTGATCAACATGTTCAAGGTCCTCCTTCTTCACGGGAAGAAAAAGTTAGCAGCATGAAGACTGGATTGGTTCATGTTGCGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATATTAGGCTTGATGTACCAAAGATTAAACCAACCTCAAAAGGCTGTATTGGCTTATGAGAAGGCCGAAGAGATATTACTCAGGCCTGAGGTTGAGATTGATAGATCGGAGTTCCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATAATAGAAAGTTCATCAGAAAATAGTTCAGACAAAGAACTTGAACCTCACGAACTTGAGGAAATTCTTTCTAAACTGAAAGAATCAATGCAATCAGATATCAGGCAGGCGGCTGTATGGAATACATTGGGTTTTATCCTTCTTAAAACTAGGCGTGTGCAGAATGCTATCTCAGTTTTGTCATCCTTGTTAGCCGTTGCACCAGAGAACTATGACTGCCTCGGTAACCTTGGAATAGCTTATCTTCAAATAGGAAATTTGGAATTATCTGCTAAGTGTTTTCAAGAGTTGATCCTAAAAGATCAAAACCATCCTGCAGCTCTGGTCAATTATGCTACCCTTCTTTTGTGTAAATATGCTTCAGTTGTACCAGGTGCTGGTGCAAATGCTTCTGAAGGTGCTTCGGAAGAACAATCCATGGCTGCTAATGTCGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGGAAAATCGGCCCATATTTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGGGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCAAAACTGGAACCTAATTGCATGTCTACTCGATATGCTGTTGCTAGCCATCGAATGAAGGAGGCAGAAAGATCTCAAGATCCAACCGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCCATAATAAGAGACGGTGATTCATCCCTGGTTGAGCTTCCAATAGCATGGGCCGGGCTTGCAATGGTTCACAAGGCTCAGCATGAGATATCAGCTGCATACGAATGTGAACAGGACGGGCTGAAGGAAATGGAAGAGCGTGCTGTTTCCAGTCTAAAGCAGGCCATAACAGAAGATCCGGATGACGTTGTGCAGTGGCATCAACTTGGCCTTCACAATCTTTGTGCTAGGCAATTCAAAACATCACAAAAATACCTCAAAGCTGCTGTTGCCCGTGACAAAGGTTGCAGCTATGCATGGTCTAACCTCGGTGTCTCACTTCAACTATCCGAAGAACAATCACAAGCTGAAGAAGTATTCAAGCGGGCTTTATCTTTGGCGACAACACAAGAAGCTCATGTGATACTATCCAATTTGGGAATTCTCTATCGCCATCAGAAAAAATATCAACTTGCGAAGGCTATGTTTACAAAGTCGCTTGAACTAAAACCTGGGTATGCTCCCGCGTTCAACAATCTGGGTCTTGTTTTTGTTGCTGAGGGTCTGTTAGAAGAGGCCAAGTATTGTTTTGAGAAAGCACTCGAATCAGATCCAATGCTTGATGCAGCCAAGTCTAACTCTATTAAGGTTGCCACAATGTCGAAGCTATGCAAAGGCCTTTCCTCATGTATTCTTAAAGAATGA 1941 0.4348 MAEKLGGSVERSSLNKPNPTPPKLVVLADLNVDPPEADDDDSSLPPPPHTEITRLINDESSQDRSLLSKDTDSNEGEGKKLNKVAKCRSKSSKTDSSIDCGVDADGDQHVQGPPSSREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKAVLAYEKAEEILLRPEVEIDRSEFLSLVQIHHAQCLIIESSSENSSDKELEPHELEEILSKLKESMQSDIRQAAVWNTLGFILLKTRRVQNAISVLSSLLAVAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYATLLLCKYASVVPGAGANASEGASEEQSMAANVAKECLLAAIKADGKSAHIWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVASHRMKEAERSQDPTELLSCAGNEMASIIRDGDSSLVELPIAWAGLAMVHKAQHEISAAYECEQDGLKEMEERAVSSLKQAITEDPDDVVQWHQLGLHNLCARQFKTSQKYLKAAVARDKGCSYAWSNLGVSLQLSEEQSQAEEVFKRALSLATTQEAHVILSNLGILYRHQKKYQLAKAMFTKSLELKPGYAPAFNNLGLVFVAEGLLEEAKYCFEKALESDPMLDAAKSNSIKVATMSKLCKGLSSCILKE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01936 646 SUPERFAMILY TPR-like 133 309 IPR011990 GO:0005515
Vifa2g01936 646 SMART tpr_5 230 263 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 139 172 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 433 466 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 552 585 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 586 619 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 353 386 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 264 297 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 482 515 IPR019734 GO:0005515
Vifa2g01936 646 SMART tpr_5 516 549 IPR019734 GO:0005515
Vifa2g01936 646 MobiDBLite consensus disorder prediction 63 93 - -
Vifa2g01936 646 ProSiteProfiles TPR repeat profile. 353 386 IPR019734 GO:0005515
Vifa2g01936 646 Gene3D Tetratricopeptide repeat domain 122 314 IPR011990 GO:0005515
Vifa2g01936 646 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Vifa2g01936 646 Pfam Tetratricopeptide repeat 139 168 IPR019734 GO:0005515
Vifa2g01936 646 Pfam Tetratricopeptide repeat 353 386 IPR019734 GO:0005515
Vifa2g01936 646 SUPERFAMILY TPR-like 465 617 IPR011990 GO:0005515
Vifa2g01936 646 Gene3D Tetratricopeptide repeat domain 321 420 IPR011990 GO:0005515
Vifa2g01936 646 Pfam Tetratricopeptide repeat 553 614 - -
Vifa2g01936 646 Gene3D Tetratricopeptide repeat domain 549 626 IPR011990 GO:0005515
Vifa2g01936 646 ProSiteProfiles TPR repeat profile. 552 585 IPR019734 GO:0005515
Vifa2g01936 646 MobiDBLite consensus disorder prediction 1 122 - -
Vifa2g01936 646 Gene3D Tetratricopeptide repeat domain 433 548 IPR011990 GO:0005515
Vifa2g01936 646 ProSiteProfiles TPR repeat profile. 516 549 IPR019734 GO:0005515
Vifa2g01936 646 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 22 642 - -
Vifa2g01936 646 Pfam Tetratricopeptide repeat 240 299 - -
Vifa2g01936 646 SUPERFAMILY TPR-like 338 461 IPR011990 GO:0005515
Vifa2g01936 646 ProSiteProfiles TPR repeat profile. 586 619 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01936 432 618 Glycosyltransferase AT3G04240 24.064 4.87e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01936 - - gmx:100820184 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01936 2 501411427 501415937 Vifa2g01936 2 501411427 501415937 ECH