Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01917 ATGCTGAAATCAGCATTCACCCCTATTTACTGGGCGCTATCGCCCAAACCAAAATCACCAAATATATCATCACACTTCATCTCAAACACCTTTTCAAACAGCACACCACATGTTCGACAAAATTCCTCTACCAACCCCAACCCCAACCCCATCATCACCCCTTCTTCAGCCTATATTCACCTTCCTTTCTGTAGAAAACGTTGCCACTACTGTGACTTCCCCATTGTCGCCCTTGGCTATGCTTCAACTCAAACACACGACGACCCGCGTGTTATAAACTACATACAATGGCTCTGCAGAGAAATCAACGCAACCAAACTAGATGAAAAACTCCACTCCCAGACGCCTCTTCAAACGGTCTTTTTTGGAGGTGGGACACCCTCTTTGGTTCCTCCAAGTATGGTTTCCTCGGTTTTGGAGACACTGAAGATGAAATTTGGGTTGAGTGAAAGTGCTGAAATTTCAATGGAAATGGACCCCGGTACGTTTGATTATAAGAAGATGGAAGATATGATGTTGTTGGGAGTGAACAGAGTTTCTTTGGGAGTTCAAGCGTTTCAGGAGAAGCTTTTGAAGAGTTGTGGCAGAGCACATGGTTTGGAAGAGGTTCATGAGGCTATTGATATTGTCAGAAAATGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCACTGCCTCATCAGACTAGTGACATGTGGGAGGAAAGTCTAAGACTCACCATTGAGGCACAGCCAACTCATGTTTCTGTTTATGATTTGCAAATTGAACAAGGCACAAAATTTGGAAGTTTGTATGCACCAGGGGAATTTCCACTGCCTTCTGAGACACAATCAGCTGATTTCTATAAGATGGCTTCAAGGATGCTTTGTGATGCAAGTTATAACCATTACGAAATCAGCAGCTACTGTAAGAATGGGTATGAATGCAAACACAACTTTACCTATTGGAAGAACAAGCCTTTCTATGCCTTTGGCCTTGGCTCTACTAGTTTTGTTGGTGGGTTAAGGTTTGCAAGACCCAGGAAGTTGAACGAGTACATGAAATTTGTGGAAAATCTTGAAAATGGATCAGTAAATAGCTCATCTGATGACAACATTAATACCAAGGACACTGCCCTGGATGTTGTGATGCTGTCCCTGAGAACTGCAAGAGGTCTAGATTTGAAGCATTTCCAAGAATCATTTGGAAGCTCTCTGGTTTATTCTCTGTTTGAGGTTTATAAACCTTATGTTGAGAGTGGACACATGGTTTTCTTGGACGAGCAAAGGAGAGCCATTAAAATAGAGGATATCAACAATTCTCTTTTGAATGATATTAACTCAGAAAGGAGAGTGGCCTATATGAGGCTAAGTGATCCAAATGGTTTCCTTTTATCAAACGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTATCCTTCTGCGCTACAAGAAGCTACTTGA 1458 0.4191 MLKSAFTPIYWALSPKPKSPNISSHFISNTFSNSTPHVRQNSSTNPNPNPIITPSSAYIHLPFCRKRCHYCDFPIVALGYASTQTHDDPRVINYIQWLCREINATKLDEKLHSQTPLQTVFFGGGTPSLVPPSMVSSVLETLKMKFGLSESAEISMEMDPGTFDYKKMEDMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLEEVHEAIDIVRKCGVENWSIDLIASLPHQTSDMWEESLRLTIEAQPTHVSVYDLQIEQGTKFGSLYAPGEFPLPSETQSADFYKMASRMLCDASYNHYEISSYCKNGYECKHNFTYWKNKPFYAFGLGSTSFVGGLRFARPRKLNEYMKFVENLENGSVNSSSDDNINTKDTALDVVMLSLRTARGLDLKHFQESFGSSLVYSLFEVYKPYVESGHMVFLDEQRRAIKIEDINNSLLNDINSERRVAYMRLSDPNGFLLSNELIALAFGVIDSWKDYPSALQEAT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01917 485 Gene3D tm_1862 like domain 62 269 IPR023404 -
Vifa2g01917 485 ProSiteProfiles Radical SAM core domain profile. 49 296 IPR007197 GO:0003824|GO:0051536
Vifa2g01917 485 SMART MiaB 54 285 IPR006638 GO:0003824|GO:0051536
Vifa2g01917 485 Pfam Radical SAM superfamily 59 240 IPR007197 GO:0003824|GO:0051536
Vifa2g01917 485 NCBIfam radical SAM family heme chaperone HemW 56 413 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vifa2g01917 485 PANTHER COPROPORPHYRINIGEN III OXIDASE 34 473 IPR034505 -
Vifa2g01917 485 SUPERFAMILY Radical SAM enzymes 53 422 - -
Vifa2g01917 485 CDD Radical_SAM 64 276 - -
Vifa2g01917 485 SFLD HemN-like, clustered with heat shock genes 54 425 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vifa2g01917 485 SFLD Radical SAM 54 425 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01917 - - gmx:100779022 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01917 2 496747948 496749699 Vifa2g01917 2 496747948 496749699 ECH