Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01910 ATGGCACCAACTGTTCCCATAGATTTTACTGGGCAAAAGGAATCCAGAAAATACTCTCATTCACAAAACATGGGAAAATCTCGAAAATATTCTAAAGGGAATTCTGCTGGATTTGTTCCTGAATTCCGTCATGTTGTAGAGACTATGGGTGAATCGGATGGATTGGGTAGCTCGGGAAGGGTTGAGATGGAGCCGGCGGCATCAGCAGATTCCTATGCACCGAACAGGAAAGGCCCTGGTTTGAAAAGTGATAGTTGTTATGGTAGTTTTGATGTACCTTATCAACTTTTCTCGTTGTCTAAAATGTCGGCTATGGAAAGAAGGGATTTGAAATTGAGATTAACTTGGGAACTTGAACAAGTGAGGAAACTTCAGAAGAAAATTGATGGTATGAATTCAACCATTATTGGATTATCTCCGTCCAGTGACATACGGAGCTGCAGTGTGGGACAGAAAAGGCCTCAGCTGGAGAGCCAATACAGTATACTGCAAGCATCAGTGCCACATGGTAAGAAAAGACCTCTGCCAGGACGTAGTGGTCCCAAGACAAAAAAAAGTATGTCTGGGCGTTTTGAATATCCGAAACCTGCTGCACCAATGGATTCATATGATACATTGATGAAACAGTGCGAGAATTTACTTAACCGTTTGATGTCTCATCAATTCGGTTGGGTTTTTAATAAGCCAGTTGATCCTGTTGCATTGAACATTCCTGATTATTTCAATGTCATCAGACATCCAATGGATTTGGGGACTGTGAAGAGTAAACTTACATCTGGTAAATATTCAAATCTCATGGATTTTGCTGCTGATGTGAAGCTGACATTCTCAAACGCATTGACTTATAATCCACCTGGCAATGATGTGCATAGCATGGCAACTACTCTTAATAAAGCCTTTCAAACAAAATGGAAGTCCATCGAGAAGAAAATTCCTGTCATTGATCACCGTGTCTCATCTGAGCTTTCGAAACATACACACATAGAAACTGAAATTTCTGACCCAATCCCCCCCATAAAAAAGAAGAAAATGACACCAAATAACCCTAATACTAAGCCAGAACCTGTCAAAAGAATCATGAGTGACATGGAGAAGCAGAAATTGAGTCAAGAGTTGGAAGAGATGCTTGGAGAGTTGCCTGAAACCATTTTGGATTTTTTGAAAGAGCAAAGTCACAATGCAGGGCAAACCAATGATGACGAAATTGAGATTGATATTGATACTCTTAGTGATGATACCTTATTCAAATTGCGGAAGCTTCTTGATGATTACATGCTGGAGAAGCAACGATTCCAGCCAAAAGCTGGACAGTGTGAAATGGAGCTTCTTAATGAATCTGGGTTTAGTAATTCATCAATGCAACCTTCTAAAGGCAATGAACTGGTTGAGGAGGATGTTGACATTATTGGTGGGAATGATCCTCCTAATTCAATTTATCCTCCCCTAGAGATTGAGAAAGATGGGGCCAACAGAAACAGTAAATGCAGTAGTTCAAGCAGTTCTAGTAGTGAATCTGGCTCATCATCCAGTGATTCAGATTCAAGTAGTTCATCTGGTAGTGAGTTAGATACTGCTAAGGTGCCAGAACCTCTTAGTTCTAAGGTGATTGGGGAAAATATAGGTCCTGGCTTGACTTATGATCAGAACAGGGGGGATCCTGGTAATCCAGTAACTGGAAATGATTCAAATAACCCGGGTAGCCAGGTTGACCAGAGTTTGGAGACTAAGACAGTTACTATTGAATCAGAAAGCCACCAAGATGGGGAGAGTGCTGCGTCTAAGAGGCAAGTCTCTCCGGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGGTTTGCTGACACCATATTCAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGATAAACGTGACCCTGAAAAGCTTAGGATAGAGCGGGAAGAACTTGAAAGAAGGCAGAAGGAAGAGAAAGCTCGGCTACAAGCAGAGGCAAAGGCTGCAGAAGAGGCTCGGAGGAAAGCTGAAGCAGAAGCTGAAGCTGAAGCCAAAAGGAAGAGGGAACTGGAGAGAGAAGCAGCACGCCAGGCTTTGCAAAAGATGGAGAAAACTGTTGACATCAATGAGAGCTGTCAATTTTTGGAAGATCTAGAGATGCTGAGTGCTGTACCTGATGAAAATACACTAAGTTTCAAAGAGGAAGCAAGCCCAGATGATCATCAAAATGGATTTGGGGGGATCAGGCTGCAGGGAAATCCCTTAGAGCAGTTGGGACTGTACATGAAGGTTGATGATGAAGATGAGGAGGAAGAACTGCCTCAAAGTGCTGCTAGTGCTGCTGAGCCAACGAAAGATGTAGAAGAAGGAGAAATTGATTGA 2355 0.4238 MAPTVPIDFTGQKESRKYSHSQNMGKSRKYSKGNSAGFVPEFRHVVETMGESDGLGSSGRVEMEPAASADSYAPNRKGPGLKSDSCYGSFDVPYQLFSLSKMSAMERRDLKLRLTWELEQVRKLQKKIDGMNSTIIGLSPSSDIRSCSVGQKRPQLESQYSILQASVPHGKKRPLPGRSGPKTKKSMSGRFEYPKPAAPMDSYDTLMKQCENLLNRLMSHQFGWVFNKPVDPVALNIPDYFNVIRHPMDLGTVKSKLTSGKYSNLMDFAADVKLTFSNALTYNPPGNDVHSMATTLNKAFQTKWKSIEKKIPVIDHRVSSELSKHTHIETEISDPIPPIKKKKMTPNNPNTKPEPVKRIMSDMEKQKLSQELEEMLGELPETILDFLKEQSHNAGQTNDDEIEIDIDTLSDDTLFKLRKLLDDYMLEKQRFQPKAGQCEMELLNESGFSNSSMQPSKGNELVEEDVDIIGGNDPPNSIYPPLEIEKDGANRNSKCSSSSSSSSESGSSSSDSDSSSSSGSELDTAKVPEPLSSKVIGENIGPGLTYDQNRGDPGNPVTGNDSNNPGSQVDQSLETKTVTIESESHQDGESAASKRQVSPEKLYRAALLRSRFADTIFKAQEKALEKDDKRDPEKLRIEREELERRQKEEKARLQAEAKAAEEARRKAEAEAEAEAKRKRELEREAARQALQKMEKTVDINESCQFLEDLEMLSAVPDENTLSFKEEASPDDHQNGFGGIRLQGNPLEQLGLYMKVDDEDEEEELPQSAASAAEPTKDVEEGEID 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01910 784 MobiDBLite consensus disorder prediction 551 579 - -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 622 691 - -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 167 194 - -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 467 599 - -
Vifa2g01910 784 SUPERFAMILY Bromodomain 183 313 IPR036427 GO:0005515
Vifa2g01910 784 MobiDBLite consensus disorder prediction 622 694 - -
Vifa2g01910 784 ProSiteProfiles Bromodomain profile. 218 290 IPR001487 GO:0005515
Vifa2g01910 784 SMART bromo_6 199 309 IPR001487 GO:0005515
Vifa2g01910 784 Pfam Bromodomain 210 294 IPR001487 GO:0005515
Vifa2g01910 784 MobiDBLite consensus disorder prediction 720 784 - -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 49 77 - -
Vifa2g01910 784 PRINTS Bromodomain signature 237 253 IPR001487 GO:0005515
Vifa2g01910 784 PRINTS Bromodomain signature 271 290 IPR001487 GO:0005515
Vifa2g01910 784 PRINTS Bromodomain signature 221 234 IPR001487 GO:0005515
Vifa2g01910 784 PRINTS Bromodomain signature 253 271 IPR001487 GO:0005515
Vifa2g01910 784 Coils Coil 637 696 - -
Vifa2g01910 784 ProSiteProfiles NET domain profile. 350 432 IPR027353 -
Vifa2g01910 784 PANTHER TRANSCRIPTION FACTOR GTE8 126 766 - -
Vifa2g01910 784 CDD Bromo_plant1 206 304 IPR037377 -
Vifa2g01910 784 Pfam Bromodomain extra-terminal - transcription regulation 360 422 IPR027353 -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 336 356 - -
Vifa2g01910 784 Gene3D - 195 323 IPR036427 GO:0005515
Vifa2g01910 784 Gene3D - 354 432 IPR038336 -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 1 35 - -
Vifa2g01910 784 MobiDBLite consensus disorder prediction 491 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01910 Vifa-Chr2 495793770 495798260 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01910 - - gmx:100776368 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01910 2 495793770 495798260 Vifa2g01910 2 495793770 495798260 ECH