Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01896 ATGAATAATAATAATAATCAAGCGAATAATTTTGCCGCATCGGCTTCATCATCGTTGTTTGGTCGTTCTGCAACAACACCACTGTCACATCAGCAGCAGTACCCTAGCCTCATGAACCATCAGCAGCAATGGGCACATCTTCTGTCTAGATCACACCCTCAAGCCCAATTTCATGGTAATTTTCAGTTTGCGGAATCCCAATCCCAATCGCAATCTCAAGCCGCGCAGCAGGCTCATTATGCGCAAATGCAAGCTCAGGCTGCATATGCTTCTTTACAACAATCATCGCAAGTTCAACCTGTTACTCCGTTGCGTAATGCTGGTAATACTAATGTTGCATCGACTCCGGTTACTGGGAGCTCGAAGCGAGGTGTGTCTCAAAGGAATTCTTTGCGGACTCCAGGTTCGTCTGGCGTGAACCAAAATGTGTCGGATAAGACTGAAGATTTGACTCCTGCTTTTCGGCGGAGGAAGAGGGAGTTACCGGAGAAGCAGACGGTGGAGAAAGTGGCTGCGATTCTGCCCGAGTCTGCTCTTTATACTCAATTGCTTGATTTTGAAGCTCAGATTGATGCTGCATTGGCTAAGAAAAAGGTTGATATGCAGGAGGCTATTAGATGCCCTACCCATGTTCGGAAAACTCTTAGAATGTATGTGTTTAATACGTTCTCGAATCGCTCAAAACCTGCCTCGGAGGATACAATTGCTGAGGAATCTTCTTGGTCTCTGAAGATAATTGGAAGAGTATTGGAAGATGGTAATGTTCCTGTGTCGCAGAGATCGAGTCCTTCTGACACAAAATTCTCTGATTTCTTCAAGAAAGTTACCATTTGCTTGGATCAGAACCTCTATCCTGAAAACCACATCATTGTGTGGGACAGTGCTCATTCGTCGAAACAACAGGACGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAAAATCGATTTGAAATATTCGCCCGAGAAATTCATGGTCTCGGCACAATTGTCTAAACTTCTAGGGATTGAGGTCGAGAGTCGCCCGAGAATAATAGCTGCTCTTTGGCATTATGTGAAGTCCAGGAGGCTACAATGTCCGGACGAACCTTCGTTCTTCATCTGTGATCCATCCCTCCAAAGGATTTTCGGGGAAGAGAAGATGGGATTCTCCATGGCTGCACAGAAGTTGTTAGACCATTTGTCTCAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTGTCTGGAGATTGTCCTGCTGGAACTGCATGTTACGACGTACAGGTTGACGTGCCTATACCACTGCAGAAAGAAATGTCTGCATTTTTGGCTAGCAACAGTGTTGAGAGTCACAAAGAGATTGAAGCTTCTGATGAGATTATTTCCAGTAACCTAAAAAAAATCCAAGAGCATCGCAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCATCAGAGTTTATCAATACTATGATTGCTTCTAAGAGCAAAGATCCAAAACTTGCTGCTGGAGATGCTGGCTCTAATTCCAACAAGGAACAGCATTCTGAATTTTATAATCAACCATGGGCTGAAGATGCTGTCATTCGGTACTTGAACCGCAAAGCTGCTGGAAGAGATGTTCCGGAGGGTAGCTAA 1638 0.4432 MNNNNNQANNFAASASSSLFGRSATTPLSHQQQYPSLMNHQQQWAHLLSRSHPQAQFHGNFQFAESQSQSQSQAAQQAHYAQMQAQAAYASLQQSSQVQPVTPLRNAGNTNVASTPVTGSSKRGVSQRNSLRTPGSSGVNQNVSDKTEDLTPAFRRRKRELPEKQTVEKVAAILPESALYTQLLDFEAQIDAALAKKKVDMQEAIRCPTHVRKTLRMYVFNTFSNRSKPASEDTIAEESSWSLKIIGRVLEDGNVPVSQRSSPSDTKFSDFFKKVTICLDQNLYPENHIIVWDSAHSSKQQDGFEVKRKGDKEFTAVIKIDLKYSPEKFMVSAQLSKLLGIEVESRPRIIAALWHYVKSRRLQCPDEPSFFICDPSLQRIFGEEKMGFSMAAQKLLDHLSQPKPIYLEHNIKLSGDCPAGTACYDVQVDVPIPLQKEMSAFLASNSVESHKEIEASDEIISSNLKKIQEHRRRRAFFLSFSQSPSEFINTMIASKSKDPKLAAGDAGSNSNKEQHSEFYNQPWAEDAVIRYLNRKAAGRDVPEGS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01896 545 SUPERFAMILY SWIB/MDM2 domain 322 409 IPR036885 -
Vifa2g01896 545 Pfam SWIB/MDM2 domain 328 399 IPR003121 -
Vifa2g01896 545 ProSiteProfiles SWIB/MDM2 domain profile. 324 401 IPR003121 -
Vifa2g01896 545 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 145 498 - -
Vifa2g01896 545 MobiDBLite consensus disorder prediction 498 519 - -
Vifa2g01896 545 MobiDBLite consensus disorder prediction 102 161 - -
Vifa2g01896 545 SMART swib_2 325 404 IPR019835 -
Vifa2g01896 545 CDD SWIB_like 331 399 - -
Vifa2g01896 545 MobiDBLite consensus disorder prediction 102 148 - -
Vifa2g01896 545 Gene3D SWIB/MDM2 domain 322 406 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01896 Vifa-Chr2 493921933 493923755 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa2g01896 SWIB 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01896 K11650 - cave:132176278 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01896 2 493921933 493923755 Vifa2g01896 2 493921933 493923755 ECH
Vifa2g01896 2 493921933 493923755 Vifa2g01896 2 493921933 493923755 PCT