Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01895 ATGGCGCCGCACGATCTCCGCCGTCCGTTCAAACGACCTTTGATCTCCGATCAAGAGAGGCGCAGACAACAGTCTCTACTTCGCCAGGCACAGAATCGCCTCGACGCTCAGCGTCAGGCTCGCTTCTTAGCCTCCACCGCATTCTCTCTCTCATCCCAGACCCCCGAATCCGAACCCGAACCCGTGAGCGAACCGGAGCCATATCAGAAAGAGGAACTCGACGTGTTGGAGGCATCGAAGCTGAAAGGTGCAGAAGCTCGGAAATGGTTCGCGAAACAACTCATGCTTCCTGAATGGATGATCGATATCCCTGAAAATCTCGCAAATAATTGGTTTGTTTTTGCAAGGCCGTCTGGTAAACGGTGTTTTGTGGTTTCCAGTAACGGAACAACTATAAGCCGTTTGAGAAACGGTTCAATACTTCACCGTTTTCCTTCTAAATTGCCCAACGGGGCGAGGACAAAAGAAGTTTCATCTGCATCTAATTCTTACTCTATACTTGACTGCATTTTCCACGAGCAAGATCAAACTTACTACGTTATTGATATGGTTTGTTGGCGTGGCTACTCCCTTTATGATTGTACTTCTGAGTTCAGGTTCTTTTGGGTGAACTCCAAGCTTGCTGAGACTGGGGCTTGTGACTCTCCTTCGTATTATCATAAGTATAAGTTCAGTTTAGTTCCGGTGTATGGTTGTGATCAGAGTGGTTTGTGTTCAGCTTACTCCGCGCCCGTGCCTTATGTCAAAGACGGTCTTCTATTCTATAACAAGCATGCACATTACCAGGCTGGGAATACACCATTAGCATTAGTTTGGAAGGATGAGAACTGCAGTCAATATGTTATGGACACTGACAGTCAAGGACAGGTTCCTAACCAACAACAGATGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACTACTTGTGATGATCCTCATGTGGTGTTTGGCTGTTTGGACGGAAGTTTCATCCAGCAGTCAGATTTGCATTCTGGGTATCTTCTACGGTTTGCGATTGGAGAAGGGGGATTGATTTTGGTGGATGGGAAACTTGAGAAGGCTGATCTAAAGTATCTTGGCAAGGCCAATCGAGCCCGTGCCTCTGCTGATAGTTTCTCTAAGGTTATGTTCCAATATAGTGTTCGACATTCCCCCCTCAGAATTGATGATCTGTTGGGATCTGTCAGCTCGCCAGTAGATCACGAAAGTAAAGCATGCGACATCGAGATGGATGGTTGA 1239 0.4665 MAPHDLRRPFKRPLISDQERRRQQSLLRQAQNRLDAQRQARFLASTAFSLSSQTPESEPEPVSEPEPYQKEELDVLEASKLKGAEARKWFAKQLMLPEWMIDIPENLANNWFVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSKLPNGARTKEVSSASNSYSILDCIFHEQDQTYYVIDMVCWRGYSLYDCTSEFRFFWVNSKLAETGACDSPSYYHKYKFSLVPVYGCDQSGLCSAYSAPVPYVKDGLLFYNKHAHYQAGNTPLALVWKDENCSQYVMDTDSQGQVPNQQQMVLELQEDGKLTTCDDPHVVFGCLDGSFIQQSDLHSGYLLRFAIGEGGLILVDGKLEKADLKYLGKANRARASADSFSKVMFQYSVRHSPLRIDDLLGSVSSPVDHESKACDIEMDG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01895 412 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g01895 412 MobiDBLite consensus disorder prediction 1 31 - -
Vifa2g01895 412 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 411 IPR017336 GO:0005634|GO:0005737|GO:0061015
Vifa2g01895 412 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 89 273 - -
Vifa2g01895 412 CDD Snurportin-1_C 89 275 - -
Vifa2g01895 412 MobiDBLite consensus disorder prediction 47 69 - -
Vifa2g01895 412 Coils Coil 20 40 - -
Vifa2g01895 412 Gene3D DNA ligase/mRNA capping enzyme 2 301 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01895 K13151 - gmx:100801927 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01895 2 493913048 493916155 Vifa2g01895 2 493913048 493916155 ECH