Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01886 ATGTCTAGGCCTTTGTACAGAGGTGTGACTGGGATTCGGATCCCTGATAACAGCGTCGATTCATGGGATTCGCAATCGAAAGATAAAACAGAAAAAGATGGTTTGGATAAAAGAGGTTCTTCTCATCAGAGTCCCTTACAATTGAAGTCTCCTTTTAGGTTGCTATTTGCAGATAATTCTAGTTCTAAATATGGTGCCAGTGAGAATGGTTTCTCGCCTGATCCGTTCATTCTTGGCACTCCTAGAAGTCGGCATAAGTTGATTCTTCTCTTTATGAAGTTTAGTATAGTATTTATAGTTATTTTTGCCCTTGCTGGTTCTTTTTGGTGGACAGTATCGATTTCAACCTCATCAAGAGGTCATATTTATCATGGTTATAGAAGACTACAAGAGAAACTTGTATCGGACCTTTTGGATATCGGAGAGATTTCTTATGCTCCCTCGAAAACGAAAGAATTGGAATTCTGTTCTCAGGAGTTTGAAAATTTTGTTCCTTGCTTTAACGCTTCAGACAATCTAGCTCAGGGTTACTCTGATGGAAGTGAGTTTGACCGGCAATGTGGCAGTGAGCTTAAGCAAAATTGTTTACTTCTCTCGCCGATGAATTACAAAATTCCTCTTCGGTGGCCTACTGGAAGGGATGTTATCTGGGTTTCTAATGTTAAAATCACTGCACAGGAAGTTCTTTCTTCTGGAAGCTTTACCAAGAGGATGATGATGCTCGATGAAGAGCAAATTTCCTTTCGTTCTGCCTCCCTTATGTTTGATGGTGTTGAAGACTACTCACACCAAATCGCAGAAATGATTGGACTTAGAAATGAATCCAACTTTATACAAGCCGGGGTTAGAACCATACTGGACATTGGTTGTGGTTATGGTAGCTTTGGAGCGCACCTCTTTCACAGTCAACTTTTAACTATGTGCATTGCAAACTATGAGCCTTCAGGGAGTCAAGTTCAACTTACACTTGAGAGGGGTCTTCCGGCTATGGTTGCTTCTTTCACTACAAAACAGTTGCCATATCCATCTCTCTCCTTTGATATGCTGCATTGTGCTAGATGTGGCATAGATTGGGACCAGAAAGATGGAATTCTCTTGATTGAAGCTGATAGACTTTTAAAACCCGGGGGCTATTTTGTCTGGACTTCGCCGCTTACAAATGCCCGTAACAAAGAAAGTCAGCAAAGGTGGAAGTTCATACATGAATTTACAGAAAACCTTTGCTGGGACATGCTATCACAGCAAGATGAAACTGTCGTATGGAAGAAAACTAGTAAAATAAAATGCTATAGTTCAAGAAAGAATGGTTCTCCTCCCCCTCCTCTATGTAGTAGAGGCTATGATGTGGAGTCTCCATACTATCGAGATCTGCAAAATTGTATTGGAGGAACACATAGCAGTCGCTGGATTTCAATTGAAAAGAGGGCAAACTGGCCTTCTAGGGATCATCCGAACAAGAATGAGCTTGCAATACACGGATTGCAACCTGATGAATTTGTGGAGGATGCTGAAAGCTGGAGGACAGCAGTACACAACTATTGGTCTCTTCTGTCACCTTTGATATTTTCTGATCATCCAAAGAGACCTGGTGATGAGGACCCTCCACCACCTTACAACATGCTACGAAACGTGCTAGACATGAATGCTCATTTTGGTGGTTTTAATTCTGCATTATTGCATTCTGGAAAATCTGTCTGGGTCATGAATGTGGTACCGGCGAATGGACTCAACTATCTTCCCTTGATCCAGGACCGCGGTTACGTTGGTGTTTTGCATGATTGGTGTGAGGCCTTTCCATCATACCCTAGAACCTATGACATGGTACATGCAGCAGGGTTTTTATCCCTTGAAACTGCTCAGCAGCAGAGATGTACCATGCTTGATATATTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGGGACACAGTTCCTTTAATAGAGTCAGCTAGAGCTTTAACAACTCGGCTGAAGTGGGATGCAAGAGTCATAGAAATCGAAAGTGATAGCGATCAGAGACTCCTGATCTGCCAGAAGCCTTTCTTTAAAAGACAAGCAAATTAA 2079 0.4185 MSRPLYRGVTGIRIPDNSVDSWDSQSKDKTEKDGLDKRGSSHQSPLQLKSPFRLLFADNSSSKYGASENGFSPDPFILGTPRSRHKLILLFMKFSIVFIVIFALAGSFWWTVSISTSSRGHIYHGYRRLQEKLVSDLLDIGEISYAPSKTKELEFCSQEFENFVPCFNASDNLAQGYSDGSEFDRQCGSELKQNCLLLSPMNYKIPLRWPTGRDVIWVSNVKITAQEVLSSGSFTKRMMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHLFHSQLLTMCIANYEPSGSQVQLTLERGLPAMVASFTTKQLPYPSLSFDMLHCARCGIDWDQKDGILLIEADRLLKPGGYFVWTSPLTNARNKESQQRWKFIHEFTENLCWDMLSQQDETVVWKKTSKIKCYSSRKNGSPPPPLCSRGYDVESPYYRDLQNCIGGTHSSRWISIEKRANWPSRDHPNKNELAIHGLQPDEFVEDAESWRTAVHNYWSLLSPLIFSDHPKRPGDEDPPPPYNMLRNVLDMNAHFGGFNSALLHSGKSVWVMNVVPANGLNYLPLIQDRGYVGVLHDWCEAFPSYPRTYDMVHAAGFLSLETAQQQRCTMLDIFIEIDRLLRPEGWIIIRDTVPLIESARALTTRLKWDARVIEIESDSDQRLLICQKPFFKRQAN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01886 692 Gene3D Vaccinia Virus protein VP39 255 431 IPR029063 -
Vifa2g01886 692 MobiDBLite consensus disorder prediction 22 39 - -
Vifa2g01886 692 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 135 687 IPR004159 GO:0008168
Vifa2g01886 692 MobiDBLite consensus disorder prediction 1 45 - -
Vifa2g01886 692 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 280 431 IPR029063 -
Vifa2g01886 692 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 542 663 IPR029063 -
Vifa2g01886 692 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 162 684 IPR004159 GO:0008168
Vifa2g01886 692 FunFam probable pectin methyltransferase QUA2 244 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01886 Vifa-Chr2 490885482 490890368 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01886 K23870 - gmx:100812530 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01886 2 490885482 490890368 Vifa2g01886 2 490885482 490890368 ECH
Vifa2g01886 2 490885482 490890368 Vifa1g01913 1 310648470 310650284 PCT