Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01879 ATGTCAATGCTAGAAACCCAAATTCACAACCAACAGTCTCTTCCCATTTTCTTCAACCCCAGTTCTGATTTTGGGGCCGGCGGTTTGTTTCTCGAACCCTCAATTCCCGATTCCTTCGTTCGTTTCATTTCTTTACGGCTTCCCGCCGTTGCTTCTTCTGAACCAATTCTTCACCGCCGGCAACGGAAAAGGGGTCCGCCGGTTGGGTGCTTTTTGTCTGTGAGCTTGCCGAGTAGTACTACTACTCTTCCTGTCGATCCCAAACCGTACGTATTGCAAAATGGTGAACACGTCTCCCATAAGGAGACAACTGCCGCCGACGGTGTCGTTTTGCCTAAAAAGGTTAGGGCAAGAGAGCGCGGTGCTATCAATAATACCACTAAGCATCTTTGGTCTGGTGCTATATCTGCCATGGTTTCTAGAACCTGTGTTGCTCCACTTGAAAGACTTAAGCTGGAATATATGGTTCGTGGTGAGAAGAGGAATATCTTTGAGGTTATTAAATCAATTGCTACTTCTCAAGGGTTCAGAGGTTTTTGGAAAGGGAACCTTCTAAATATTCTGCGGACGGCTCCGTTTAAAGCTGTTAATTTTAGCGCATATGATACTTATCGAAAACAGCTACTTAGATTCTCTGGAAATGAAGAAACTACCAATTTTGAAAGGTTTATTGCGGGTGCTGCTGCTGGGCTCACTGCTACTATTATTTGCCTACCACTTGACACTATTCGGACCAAGATAGTGGCACCTGGCGGTGAAACTTTGGGTGGTGTAATTGGTGCTTTCCAACACATGATACGAACTGAAGGCATCTTTTCTCTATACAAGGGTCTAGTACCGTCACTTATAAGCATGGCTCCTTCTAGTGCTGTTTTTTATGGTGTATATGATATGCTAAAATCATCTTATCTGCATTCACCCGAAGGAATGCAAAGAATCCAGAATTTGCATAAACAGGGTCAGGAACTGAGTGCCTTTGATCAGCTTGAGTTGGGGCCAGTAAGGACATTGTTGTATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACGTACCCGTTCGAAGTTGTGAGAAGGCAGCTTCAATTGCAAGTCCAGTCTACTAAATTAAGTTCTTTAGCAACTTTTGTCAAAATAGTGGAACAAGGAGGCGTTTCAGCCCTCTATGCTGGACTTGTTCCCAGCTTATTACAGGTGCTTCCTTCAGCATCAATTAGTTACTTTGTGTATGAGTTCATGAAGATTGTCCTCAAAGTAGAGTGA 1263 0.4418 MSMLETQIHNQQSLPIFFNPSSDFGAGGLFLEPSIPDSFVRFISLRLPAVASSEPILHRRQRKRGPPVGCFLSVSLPSSTTTLPVDPKPYVLQNGEHVSHKETTAADGVVLPKKVRARERGAINNTTKHLWSGAISAMVSRTCVAPLERLKLEYMVRGEKRNIFEVIKSIATSQGFRGFWKGNLLNILRTAPFKAVNFSAYDTYRKQLLRFSGNEETTNFERFIAGAAAGLTATIICLPLDTIRTKIVAPGGETLGGVIGAFQHMIRTEGIFSLYKGLVPSLISMAPSSAVFYGVYDMLKSSYLHSPEGMQRIQNLHKQGQELSAFDQLELGPVRTLLYGAIAGACAEAATYPFEVVRRQLQLQVQSTKLSSLATFVKIVEQGGVSALYAGLVPSLLQVLPSASISYFVYEFMKIVLKVE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01879 420 Pfam Mitochondrial carrier protein 331 417 IPR018108 -
Vifa2g01879 420 Pfam Mitochondrial carrier protein 126 209 IPR018108 -
Vifa2g01879 420 Pfam Mitochondrial carrier protein 217 304 IPR018108 -
Vifa2g01879 420 FunFam Mitochondrial substrate carrier family protein 123 420 - -
Vifa2g01879 420 Gene3D Mitochondrial carrier domain 121 419 IPR023395 -
Vifa2g01879 420 SUPERFAMILY Mitochondrial carrier 124 413 IPR023395 -
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 182 202 IPR002067 GO:0055085
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 232 250 IPR002067 GO:0055085
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 340 362 IPR002067 GO:0055085
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Vifa2g01879 420 PRINTS Mitochondrial carrier protein signature 275 293 IPR002067 GO:0055085
Vifa2g01879 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 207 IPR018108 -
Vifa2g01879 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 302 IPR018108 -
Vifa2g01879 420 PANTHER SOLUTE CARRIER FAMILY 25 121 419 - -
Vifa2g01879 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 331 416 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01879 Vifa-Chr2 489121200 489125544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01879 202 414 Organic Solute Cotransporters AT5G64970 19.718 6.80e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01879 - - gmx:100812227 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01879 2 489121200 489125544 Vifa2g01879 2 489121200 489125544 ECH